Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCATGTTCTACATTCCCAGCTTCAAGATCTATGGCTCCGTGGCGGGCTTCTACGACTACGGCCCGCCCGGCTGCGCCATCAAGCAGAACATGACGCAGgtgggcgcgcgcggcgaggccaggcgggggagcaggcgggggctggcgtgaggggctgggtgtaggggtgccgttggggctgtgtgggccgaggctgctcggggccggggcgtgaaaggcggagagcaaaggttggatgacgggccgcgtgcgcctgcctacctccccgtcgccccccaccctcaacag

Basic information

species Chlamydomonas reinhardtii
transcript EDO97121
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDO97121 (Chlamydomonas reinhardtii), 5'ss of exon 4
lower sequence: LOC_Os04g32650.1 (Oryza sativa), 5'ss of exon 1
GCGCATGTTCTACATTCCCAGCTTCAAGATCTATGGCTCCGTGGCGGGCTTCTACGACTACGGCCCGCCCGGCTGCGCCATCAAGCAGAACATGACGCAGgtgggcgcgcgcggcgaggccaggcgg-------gggagcaggcgggggctggcgtgaggggctgggtgtaggggtgccgttggggctgtgtgggccgaggctgctcggggccggggcgtgaaaggcggagagcaaaggttggatgacgggccgcgtgcgcctgcctacctccccgtcgccccccaccctcaacag
            | | ||   |||||||||||| |||  ||| |||||| |||||||||||||||| |||||||||||| |||||   ||| |  | |   |    ||||  ||  |  ||   |            |  |  || |      | |       | |||||||  ||     | |   || | | |  |    |  ||||||  |                                                                                  
------------CGTCCCGTCCTTCAAGATCTACGGCGGCGTCGCGGGCCTCTACGACTACGGCCCTCCCGGCTGCGCCGTCAAGGCCAACGTC-CTCGCCTTCTGGCGCCAGgttatccccccccacccccccactactacccgtgcttcttcttcttctcttcggtgtagtagtagtagtaga-ttgggggagtggccaattttcggggtgg----------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10786865|gb|AV643537.1|AV643537
EST:     TCTACGACTACGGCCCGCCCGGCTGCGCCATCAAGCAGAACATGACGCAG                         GTGTGGCGCACGCACTTCGTGCTGGAGGAGAACATGCTGGAGGTGGAGTGC
genomic: TCTACGACTACGGCCCGCCCGGCTGCGCCATCAAGCAGAACATGACGCAGgtgggcgcgc ... ccctcaacagGTGTGGCGCACGCACTTCGTGCTGGAGGAGAACATGCTGGAGGTGGAGTGC