Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcgcgcccgtgctgtccctcagattacttgtaaactcttgctggagctagcaacgctaatgggcaatgcttgtcgctgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO96600
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10779798|gb|AV636478.1|AV636478
EST:     GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC                         AAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
EST: gi|49467422|gb|BP095335.1|BP095335
EST:     GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC                         AAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
EST: gi|10778347|gb|AV635027.1|AV635027
EST:     GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC                         AAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
EST: gi|15694356|gb|BI718661.1|BI718661
EST:     GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC                         AAAATCCGCACCGTCTAGCT
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCT
EST: gi|161796597|gb|FC082914.1|FC082914
EST:     GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC                         AAAATCCGCACCGTGGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
EST: gi|10771327|gb|AV622150.1|AV622150
EST:     GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC                         AAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
EST: gi|22068890|gb|BQ818649.1|BQ818649
EST:     ACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC                         AAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
genomic: ACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
EST: gi|8933046|gb|BE227807.1|BE227807
EST:     GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC                         AAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
EST: gi|10776378|gb|AV633058.1|AV633058
EST:     GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC                         AAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
EST: gi|10778045|gb|AV634725.1|AV634725
EST:     GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC                         AAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
EST: gi|22063901|gb|BQ815490.1|BQ815490
EST:     GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC                         AAAATCCGCACCGTCTAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
EST: gi|16432961|gb|BI998187.1|BI998187
EST:     GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC                         AAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
EST: gi|6546326|gb|AV392110.1|AV392110
EST:     GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC                         AAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
EST: gi|10777853|gb|AV634533.1|AV634533
EST:     GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC                         AAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
EST: gi|22073092|gb|BQ822430.1|BQ822430
EST:     GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC                         AAAATCCGCACCGCCGAACTCGATGGG
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGG
EST: gi|15697029|gb|BI721334.1|BI721334
EST:     GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC                         AAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
EST: gi|16430540|gb|BI995766.1|BI995766
EST:     GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTC                         AAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT
genomic: GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcg ... gtcgctgcagAAAATCCGCACCGTCGAGCTCGATGGGAAGGTGATCAAGCTTCAGATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGACACCTACACCGAGAGCTATATCAGCACCATCGGCGTGGACTTCgtgagtctcgcgcccgtgctgtccctcagattacttgtaaactcttgctggagctagcaacgctaatgggcaatgcttgtcgctgcag

- - - - - - - - AGAGCT