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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGCCACCTACTTCGACGACCTGCAGAAGAACTCCACCATCTTCGCCACCAACGACCCCGCTGGCTTCAACATCATCGATGTTGCCGgtgggttgatcctctgacaagtgccactgctctgcagcaattgcgtgcctggtgtacgtggggacgttcctggggacgctcctgtcctacctgctctgctagttgaaatgctccgcgatactccgaggtacaataagtcctgacgatctctgtgtttggtcaattcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO96591
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10126944|gb|BE725648.1|BE725648
EST:     CATCTTCGCCACCAACGACCCCGCTGGCTTCAACATCATCGATGTTGCCG                         GCTGGGGCGCTCTGGGCCACGCCGTGGGCTTCGACGAGCTGGCCATCAACT
genomic: CATCTTCGCCACCAACGACCCCGCTGGCTTCAACATCATCGATGTTGCCGgtgggttgat ... caattcgcagGCTGGGGCGCTCTGGGCCACGCCGTGGGCTTCGCCGTGCTGGCCATCAACT
EST: gi|7545749|gb|AW676237.1|AW676237
EST:     CGACCCCGCT-GCTTCAACATCATC-ATGTTGCCG                         GCTGGGGCGCTCTGGGCCACGCCGTGGGCTTCGCCGTGCTGGCCATCAACT
genomic: CGACCCCGCTGGCTTCAACATCATCGATGTTGCCGgtgggttgat ... caattcgcagGCTGGGGCGCTCTGGGCCACGCCGTGGGCTTCGCCGTGCTGGCCATCAACT
EST: gi|23366797|gb|BU654616.1|BU654616
EST:     CATCTTCGCCACCAACGACCCCGCTGGCTTCAACATCATCGATGTTGCCG                         GCTGGGGCGCTCTGGGCCACGCCGTGGGCTTCGCCGTGCTGGCCATCAACT
genomic: CATCTTCGCCACCAACGACCCCGCTGGCTTCAACATCATCGATGTTGCCGgtgggttgat ... caattcgcagGCTGGGGCGCTCTGGGCCACGCCGTGGGCTTCGCCGTGCTGGCCATCAACT
EST: gi|23366796|gb|BU654615.1|BU654615
EST:     TCATCGATG-TGCCG                         GCTGGGGCGCTCTGGGCCACGCCGTGGGCTTCGCCGTGCTGGCCATCAACT
genomic: TCATCGATGTTGCCGgtgggttgat ... caattcgcagGCTGGGGCGCTCTGGGCCACGCCGTGGGCTTCGCCGTGCTGGCCATCAACT
EST: gi|7687571|gb|AW758217.1|AW758217
EST:     CATCTTCGCCACCAACGACCCCGCTGGCTTCAACATCATCGATGTTGCCG                         GCTGGGGCGCTCTGGGCCACGCCGTGGGCTTCGCCGTGCTGGCCATCAACT
genomic: CATCTTCGCCACCAACGACCCCGCTGGCTTCAACATCATCGATGTTGCCGgtgggttgat ... caattcgcagGCTGGGGCGCTCTGGGCCACGCCGTGGGCTTCGCCGTGCTGGCCATCAACT