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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggcatttgcttggtgacctagcacagtgcagcgtccatgtgtgacagcgttggccgtgtgtgctccccggcagctgcctgggctcccgcagcgctgctgccgccatgctaagactgacctacggcctgctgctgccacccgctgcaactgctgctgtgtgcctcaccctgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO96521
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34985415|gb|CF559332.1|CF559332
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|34989570|gb|CF563487.1|CF563487
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|34990626|gb|CF564543.1|CF564543
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|8932864|gb|BE227625.1|BE227625
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|34993723|gb|CF567640.1|CF567640
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGCGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCCA
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCC-A
EST: gi|34990415|gb|CF564332.1|CF564332
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|34989267|gb|CF563184.1|CF563184
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|15701769|gb|BI726074.1|BI726074
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|34993288|gb|CF567205.1|CF567205
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|34989651|gb|CF563568.1|CF563568
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|15703706|gb|BI728011.1|BI728011
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|16432459|gb|BI997685.1|BI997685
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|34991369|gb|CF565286.1|CF565286
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|34993942|gb|CF567859.1|CF567859
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|34982454|gb|CF556371.1|CF556371
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|22056996|gb|BQ812469.1|BQ812469
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|34990412|gb|CF564329.1|CF564329
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|16071488|gb|BI873484.1|BI873484
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|16072230|gb|BI874226.1|BI874226
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|34983474|gb|CF557391.1|CF557391
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|16436197|gb|BM001417.1|BM001417
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|15371758|gb|BI531184.1|BI531184
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|34989650|gb|CF563567.1|CF563567
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|34989571|gb|CF563488.1|CF563488
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|34983476|gb|CF557393.1|CF557393
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|34983404|gb|CF557321.1|CF557321
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAC                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACCAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|34982455|gb|CF556372.1|CF556372
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|16437782|gb|BM003002.1|BM003002
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|34990627|gb|CF564544.1|CF564544
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGTTCAC
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCAC
EST: gi|34993509|gb|CF567426.1|CF567426
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|22068678|gb|BQ818509.1|BQ818509
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|34992412|gb|CF566329.1|CF566329
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|34983403|gb|CF557320.1|CF557320
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|15696361|gb|BI720666.1|BI720666
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACT
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACT
EST: gi|34989572|gb|CF563489.1|CF563489
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|34985416|gb|CF559333.1|CF559333
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|34981552|gb|CF555469.1|CF555469
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
EST: gi|34990625|gb|CF564542.1|CF564542
EST:     AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAG                         GACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG
genomic: AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggc ... caccctgcagGACCAGTGGTCGCCCTGCCACAACGTGTCCACACTGCTCACAAGCATCCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATGTGTACCAAGACGGCTCGCTGTGCATGGACGTGCTTCAGgtgcctgggcatttgcttggtgacctagcacagtgcagcgtccatgtgtgacagcgttggccgtgtgtgctccccggcagctgcctgggctcccgcagcgctgctgccgccatgctaagactgacctacggcctgctgctgccacccgctgcaactgctgctgtgtgcctcaccctgcag

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