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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTCTGGAGGATACACGTCGAGCTGCCGGAAGCCTATCCCTACAAGTCGCCTTCCATCGGATTCGTGAACCGGTGCTACCACCCGAACATTGACGAGGCgtaagttgccgcagcgcaagcgggccccgcggccgctatctcggcatcgtcgccgaaagttgggcccaaccgccccgcaccggttcacatcaatgcgcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP09753
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23365360|gb|BU653180.1|BU653180
EST:     CCTTCCATCGGATTCGTAAACCGGTGCTACCACCCGAACATTGACGAGGC                         GTCGGGGTCTGTGTGCCTGGATGTCATCAATCAGACCTGGAGCCCGATGTT
genomic: CCTTCCATCGGATTCGTGAACCGGTGCTACCACCCGAACATTGACGAGGCgtaagttgcc ... atgcgcgcagGTCGGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTT
EST: gi|10788266|gb|AV644938.1|AV644938
EST:     CCTTCCATCGGATTCGTAAACCGGTGCTACCACCCGAACATTGACGAGGC                         GTCGGGGTCTGTGTGCCTGGATGTCATCAATCAGACCTGGAGCCCGATGTT
genomic: CCTTCCATCGGATTCGTGAACCGGTGCTACCACCCGAACATTGACGAGGCgtaagttgcc ... atgcgcgcagGTCGGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTT
EST: gi|8400882|gb|BE056516.1|BE056516
EST:     CCTTCCATCGGATTCGTGAACCGGTGCTACCACCCGAACATTGACGAGGC                         GTCGGGGTCTGTGTGCCTGGATGTCATCAACCAGACCTGGAGCCCGATGTT
genomic: CCTTCCATCGGATTCGTGAACCGGTGCTACCACCCGAACATTGACGAGGCgtaagttgcc ... atgcgcgcagGTCGGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTT
EST: gi|49466669|gb|BP094582.1|BP094582
EST:     CCTTCCATCGGATTCGTGAACCGGTGCTACCACCCGAACATTGACGAGGC                         GTCGGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTT
genomic: CCTTCCATCGGATTCGTGAACCGGTGCTACCACCCGAACATTGACGAGGCgtaagttgcc ... atgcgcgcagGTCGGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTT
EST: gi|16071742|gb|BI873738.1|BI873738
EST:     CCTTCCATCGGATTCGNGAACCGGTGCTACCACCCGAACATTGACGAGGC                         GTCGGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTT
genomic: CCTTCCATCGGATTCGTGAACCGGTGCTACCACCCGAACATTGACGAGGCgtaagttgcc ... atgcgcgcagGTCGGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTT
EST: gi|22068907|gb|BQ818660.1|BQ818660
EST:     CCTTCCATCGGATTCGTGAACCGGTGCTACCACCCGAACATTGACGAGGC                         GTCGGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTT
genomic: CCTTCCATCGGATTCGTGAACCGGTGCTACCACCCGAACATTGACGAGGCgtaagttgcc ... atgcgcgcagGTCGGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTT
EST: gi|15699843|gb|BI724148.1|BI724148
EST:     CCTTCCATCGGATTCGTGAACCGGTGCTACCACCCGAACATTGACGAGGC                         GTCGGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTT
genomic: CCTTCCATCGGATTCGTGAACCGGTGCTACCACCCGAACATTGACGAGGCgtaagttgcc ... atgcgcgcagGTCGGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTT