Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCATCCTGGACCAGAACACGGGGGAGGTCAACCTGAACTTTGAGTCCGACTTCTATTTCACGGCGGGGCCACTGCCGTACCAGCCGCCCGGgtaagactgggttggactgggctggaccccgggtgatcgcacgctcctgcattccccgcatcggtagcaggtagccgccacctttgcgctcacagccaaatccacgcagccggcagccccctgccggccaagtgcgacactcttcgggtgtccatctccacctcacgaccatggcgcccccccccccgcctgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP09685
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8576467|gb|BE129008.1|BE129008
EST:     GAGTCCGACTTCTATTTCACGGCGGGGCCACTGCCGTACCAGCCGCCCGG                         GCTGAAGATCCGCACGGTGCTGACCACGGAGACCACCAAGGGCGCGCACCT
genomic: GAGTCCGACTTCTATTTCACGGCGGGGCCACTGCCGTACCAGCCGCCCGGgtaagactgg ... ccgcctgcagGCTGAAGATCCGCACGGTGCTGACCACGGAGACCACCAAGGGCGCGCACCT
EST: gi|23360493|gb|BU648313.1|BU648313
EST:     GAGTCCGACTTCTATTTCACGGCGGGGCCACTGCCGTACCAGCCGCCCGG                         GCTGAAGATCCGCACGGTGCTGACCA
genomic: GAGTCCGACTTCTATTTCACGGCGGGGCCACTGCCGTACCAGCCGCCCGGgtaagactgg ... ccgcctgcagGCTGAAGATCCGCACGGTGCTGACCA
EST: gi|15692681|gb|BI716986.1|BI716986
EST:     GAGTCCGACTTCTATTTCACGGCGGAGCCACTGCCGTACCAGCCGCCCGG                         GCTGAAGATCCGCACGGTGCTGACCACGGAGACCAC
genomic: GAGTCCGACTTCTATTTCACGGCGGGGCCACTGCCGTACCAGCCGCCCGGgtaagactgg ... ccgcctgcagGCTGAAGATCCGCACGGTGCTGACCACGGAGACCAC