1 5' 3' | 2 5' 3' | 3 5' 3' |
GGACATTGAGCCCGCGGGCCTGCGGCCAGACATGTCTCCGGACCCGTTCGTCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgctgtgccgagggtgtgggttttttgggatcgctttcatacctgtggccgcaccgtgtgtggctttcaaagcggaggagtacaacagcggtgc...
species | Chlamydomonas reinhardtii |
transcript | EDP09633 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTEST: gi|15373523|gb|BI532949.1|BI532949
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCT
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTCEST: gi|15700147|gb|BI724452.1|BI724452
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGACGACCTTCEST: gi|22049389|gb|BQ808778.1|BQ808778
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTEST: gi|161811720|gb|FC097457.1|FC097457
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCT
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTCEST: gi|15692835|gb|BI717140.1|BI717140
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGTTCTGCNTC-TTCACACTCATCATCCTGTCCATGCTGEST: gi|161800507|gb|FC085521.1|FC085521
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGC-TCCTTCACACTCATCATCCTGTCCATGCTG
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTCEST: gi|34981952|gb|CF555869.1|CF555869
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTCEST: gi|161821605|gb|FC108119.1|FC108119
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTCEST: gi|14238973|gb|BG857789.1|BG857789
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGTTCTGCTCCTTCACACTCATCATEST: gi|15701022|gb|BI725327.1|BI725327
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCAT
EST: TCA-GGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCA-GTG GTGCTGTTCTGCTCCT-CACACTCATCATCCTGTCCATGEST: gi|161821845|gb|FC107904.1|FC107904
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATG
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTCEST: gi|161818628|gb|FC103933.1|FC103933
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTCEST: gi|34991242|gb|CF565159.1|CF565159
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTCEST: gi|161823610|gb|FC108532.1|FC108532
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTCEST: gi|34993019|gb|CF566936.1|CF566936
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: AGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTCEST: gi|161794806|gb|FC081083.1|FC081083
genomic: AGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTCEST: gi|161792704|gb|FC080671.1|FC080671
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTEST: gi|34993020|gb|CF566937.1|CF566937
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCT
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTCEST: gi|161811721|gb|FC097458.1|FC097458
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTCEST: gi|14224932|gb|BG843748.1|BG843748
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTEST: gi|34991241|gb|CF565158.1|CF565158
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagG-TGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTT
EST: CAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTCEST: gi|161813669|gb|FC101734.1|FC101734
genomic: CAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTCEST: gi|161815795|gb|FC103197.1|FC103197
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTCEST: gi|15692487|gb|BI716792.1|BI716792
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTEST: gi|22069727|gb|BQ819249.1|BQ819249
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTT
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTEST: gi|14234656|gb|BG853472.1|BG853472
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCT
EST: TCAGGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GNNGCCTGNTCTGCTCCTTCACACTCATCATCCTGTCCATGCTTGGCGACCEST: gi|15691905|gb|BI716210.1|BI716210
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGT-GC-TGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCT-GGCGACC
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTEST: gi|14238166|gb|BG856982.1|BG856982
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCT
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGGTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTEST: gi|22063291|gb|BQ815151.1|BQ815151
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCT
EST: GTCAGCATGCTGAAGAGCATCACGCTCACNCAAGTG GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTCEST: gi|34981951|gb|CF555868.1|CF555868
genomic: GTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTCEST: gi|34983280|gb|CF557197.1|CF557197
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGTTCTGCTGCTTCACACTCATCATCCTEST: gi|14237931|gb|BG856747.1|BG856747
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCT
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGGCTGTTCTGGCTC-TTCACACTCATCATCCTGTCCATGCTGGCGACCTEST: gi|34989464|gb|CF563381.1|CF563381
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTG-CTGTTCTG-CTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCT
EST: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTGCATGCTGGCGACCTTC
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACATTGAGCCCGCGGGCCTGCGGCCAGACATGTCTCCGGACCCGTTCGTCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgctgtgccgagggtgtgggttttttgggatcgctttcatacctgtggccgcaccgtgtgtggctttcaaagcggaggagtacaacagcggtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacaaca