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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACATTGAGCCCGCGGGCCTGCGGCCAGACATGTCTCCGGACCCGTTCGTCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgctgtgccgagggtgtgggttttttgggatcgctttcatacctgtggccgcaccgtgtgtggctttcaaagcggaggagtacaacagcggtgc...

Basic information

species Chlamydomonas reinhardtii
transcript EDP09633
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23364803|gb|BU652623.1|BU652623
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCT
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCT
EST: gi|15373523|gb|BI532949.1|BI532949
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: gi|15700147|gb|BI724452.1|BI724452
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGACGACCTTC
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: gi|22049389|gb|BQ808778.1|BQ808778
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCT
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCT
EST: gi|161811720|gb|FC097457.1|FC097457
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: gi|15692835|gb|BI717140.1|BI717140
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGTTCTGCNTC-TTCACACTCATCATCCTGTCCATGCTG
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGC-TCCTTCACACTCATCATCCTGTCCATGCTG
EST: gi|161800507|gb|FC085521.1|FC085521
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: gi|34981952|gb|CF555869.1|CF555869
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: gi|161821605|gb|FC108119.1|FC108119
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: gi|14238973|gb|BG857789.1|BG857789
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGTTCTGCTCCTTCACACTCATCAT
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCAT
EST: gi|15701022|gb|BI725327.1|BI725327
EST:     TCA-GGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCA-GTG                         GTGCTGTTCTGCTCCT-CACACTCATCATCCTGTCCATG
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATG
EST: gi|161821845|gb|FC107904.1|FC107904
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: gi|161818628|gb|FC103933.1|FC103933
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: gi|34991242|gb|CF565159.1|CF565159
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: gi|161823610|gb|FC108532.1|FC108532
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: gi|34993019|gb|CF566936.1|CF566936
EST:     AGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
genomic: AGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: gi|161794806|gb|FC081083.1|FC081083
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: gi|161792704|gb|FC080671.1|FC080671
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCT
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCT
EST: gi|34993020|gb|CF566937.1|CF566937
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: gi|161811721|gb|FC097458.1|FC097458
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: gi|14224932|gb|BG843748.1|BG843748
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTT
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagG-TGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTT
EST: gi|34991241|gb|CF565158.1|CF565158
EST:     CAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
genomic: CAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: gi|161813669|gb|FC101734.1|FC101734
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: gi|161815795|gb|FC103197.1|FC103197
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: gi|15692487|gb|BI716792.1|BI716792
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTT
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTT
EST: gi|22069727|gb|BQ819249.1|BQ819249
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCT
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCT
EST: gi|14234656|gb|BG853472.1|BG853472
EST:     TCAGGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GNNGCCTGNTCTGCTCCTTCACACTCATCATCCTGTCCATGCTTGGCGACC
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGT-GC-TGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCT-GGCGACC
EST: gi|15691905|gb|BI716210.1|BI716210
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCT
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCT
EST: gi|14238166|gb|BG856982.1|BG856982
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGGTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCT
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCT
EST: gi|22063291|gb|BQ815151.1|BQ815151
EST:     GTCAGCATGCTGAAGAGCATCACGCTCACNCAAGTG                         GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
genomic: GTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: gi|34981951|gb|CF555868.1|CF555868
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC
EST: gi|34983280|gb|CF557197.1|CF557197
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGTTCTGCTGCTTCACACTCATCATCCT
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCT
EST: gi|14237931|gb|BG856747.1|BG856747
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGGCTGTTCTGGCTC-TTCACACTCATCATCCTGTCCATGCTGGCGACCT
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTG-CTGTTCTG-CTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCT
EST: gi|34989464|gb|CF563381.1|CF563381
EST:     TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTG                         GTGCTGTTCTGCTCCTTCACACTCATCATCCTGTGCATGCTGGCGACCTTC
genomic: TCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgct ... tgtacctcagGTGCTGTTCTGCTCCTTCACACTCATCATCCTGTCCATGCTGGCGACCTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGACATTGAGCCCGCGGGCCTGCGGCCAGACATGTCTCCGGACCCGTTCGTCAAGGAGACGCCCGTCAGCATGCTGAAGAGCATCACGCTCACCCAAGTGgtgaggtgctgtgccgagggtgtgggttttttgggatcgctttcatacctgtggccgcaccgtgtgtggctttcaaagcggaggagtacaacagcggtgc

- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacaaca