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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGGCGGCCATGCTGGTGTACCTGCTGCACAGCTGGCACGTCAAGCAGCACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAGgtgggcgggggcgggttgggcggcggaggaggaggaggtggaggtgaaggaggaggcaaacgatgatggttagcggcggcggaggagtcactgcgcggtg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP09379
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15692741|gb|BI717046.1|BI717046
EST:     ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAG                         CGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACG
genomic: ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAGgtgggcgggg ... tcctccgcagCGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACG
EST: gi|16072325|gb|BI874321.1|BI874321
EST:     ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAG                         CGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACG
genomic: ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAGgtgggcgggg ... tcctccgcagCGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACG
EST: gi|15697133|gb|BI721438.1|BI721438
EST:     ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAG                         CGCCGGTTGATCATGTTCGGCTCGTTCCTCTT
genomic: ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAGgtgggcgggg ... tcctccgcagCGCCGGTTGATCATGTTCGGCTCGTTCCTCTT
EST: gi|14229549|gb|BG848365.1|BG848365
EST:     ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAG                         CGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACG
genomic: ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAGgtgggcgggg ... tcctccgcagCGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACG
EST: gi|10778288|gb|AV634968.1|AV634968
EST:     ACACGGTGGACGCCACGGACGTGTTCCGGCAGCTGCCGGTGCAGAAGAAG                         CGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTAATCATCACG
genomic: ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAGgtgggcgggg ... tcctccgcagCGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACG
EST: gi|8932577|gb|BE227338.1|BE227338
EST:     ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAG                         CGCCGGCTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGGGATCATCACG
genomic: ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAGgtgggcgggg ... tcctccgcagCGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACG
EST: gi|10778289|gb|AV634969.1|AV634969
EST:     ACACGGTGGACGCCACGGACGTGTTCCGGCAGCTGCCGGTGCAGAAGAAG                         CGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTAATCATCACG
genomic: ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAGgtgggcgggg ... tcctccgcagCGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACG
EST: gi|15692624|gb|BI716929.1|BI716929
EST:     ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAG                         CGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACG
genomic: ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAGgtgggcgggg ... tcctccgcagCGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACG
EST: gi|10774326|gb|AV625149.1|AV625149
EST:     ACACGGTGGACGCCACGGACGTGTTCCGGCAGCTGCCGGTGCAGAAGAAG                         CGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTAATCATCACG
genomic: ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAGgtgggcgggg ... tcctccgcagCGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACG
EST: gi|16433071|gb|BI998297.1|BI998297
EST:     ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAG                         CGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACG
genomic: ACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAGgtgggcgggg ... tcctccgcagCGCCGGTTGATCATGTTCGGCTCGTTCCTCTTGTTCTTCGTGATCATCACG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAGGCGGCCATGCTGGTGTACCTGCTGCACAGCTGGCACGTCAAGCAGCACACGGTGGACGCCACGGACGTGTTTCGGCAGCTGCCGGCGCAGAAGAAGgtgggcgggggcgggttgggcggcggaggaggaggaggtggaggtgaaggaggaggcaaacgatgatggttagcggcggcggaggagtcactgcgcggtg

- - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggaggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatggt