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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCCAACTTCTACTCGTGCGCTGCCTACGGCAAGgtgagtgttcgcagctctgctcctaagcctttgtggtgctcggtgctgccccagttctttctgactggccccccttcgaccagccccgacttacgccaaccccctcccgcccctttgccatgtgctcctcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP09352
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22050043|gb|BQ809040.1|BQ809040
EST:     AGGCCAACTTCTACTCGTGCGCTGCCTACGGCAAG                         CCCATCGCCCAAGCCTACTGGGGTGCTAACGGCCAGAGGCCTCTGGGCTGT
genomic: AGGCCAACTTCTACTCGTGCGCTGCCTACGGCAAGgtgagtgttc ... tgctcctcagCCCATCGCCCAAGCCTACTGGGGTGCTAACGGCCAGAGGCCTCTGGGCTGT
EST: gi|22077026|gb|BQ825802.1|BQ825802
EST:     AGGCCAACTTCTACTCGTGCGCTGCCTACGGCAAG                         CCCATCGCCCAAGCCTACTGGGGTGCTAACGGCCAGAGGCCTCTGGGCTGT
genomic: AGGCCAACTTCTACTCGTGCGCTGCCTACGGCAAGgtgagtgttc ... tgctcctcagCCCATCGCCCAAGCCTACTGGGGTGCTAACGGCCAGAGGCCTCTGGGCTGT
EST: gi|16433061|gb|BI998287.1|BI998287
EST:     AGGCCAACTTCTACTCGTGCGCTGCCTACGGCAAG                         CCCATCGCCCAAGCCTACTGGGGTGCTAACGGCCAGAGGCCTCTGGGCTGT
genomic: AGGCCAACTTCTACTCGTGCGCTGCCTACGGCAAGgtgagtgttc ... tgctcctcagCCCATCGCCCAAGCCTACTGGGGTGCTAACGGCCAGAGGCCTCTGGGCTGT
EST: gi|22073616|gb|BQ822954.1|BQ822954
EST:     AGGCCAACTTCTACTCGTGCGCTGCCTACGGCAAG                         CCCATCGCCCAAGCCTACTGGGGTGCTAACGGCCAGAGGCCTCTGGGCTGT
genomic: AGGCCAACTTCTACTCGTGCGCTGCCTACGGCAAGgtgagtgttc ... tgctcctcagCCCATCGCCCAAGCCTACTGGGGTGCTAACGGCCAGAGGCCTCTGGGCTGT
EST: gi|22072330|gb|BQ821668.1|BQ821668
EST:     AGGCCAACTTCTACTCGTGCGCTGCCTACGGCAAG                         CCCATCGCCCAAGCCTACTGGGGTGCTAACGGCCAGAGGCCTCTGGGCTGT
genomic: AGGCCAACTTCTACTCGTGCGCTGCCTACGGCAAGgtgagtgttc ... tgctcctcagCCCATCGCCCAAGCCTACTGGGGTGCTAACGGCCAGAGGCCTCTGGGCTGT
EST: gi|15697123|gb|BI721428.1|BI721428
EST:     AGGCCAACTTCTACTCGTGCGCTGCCTACGGCAAG                         CCCATCGCCCAAGCCTAC
genomic: AGGCCAACTTCTACTCGTGCGCTGCCTACGGCAAGgtgagtgttc ... tgctcctcagCCCATCGCCCAAGCCTAC