1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGACCGCCGATTGTACTTGGTGTTCGAATTCCTGGACCTGGACCTTAAAAAGCAGATGGACCAGACGCCGAACTTCAGCCGGAATCAGCGCGTCATCAAGgtgtgctagcgggaaaacaagcgggggcaggtggcggcaaaagggcgtcgggtgaagcgccgcaggtgggagctgggtgcgtgctgggtgggaagagtgcgacatggggtttcgccgtcggtaatcttggataaatctggatcgtgaccagaaccttgcgcgctcgtgcag
species | Chlamydomonas reinhardtii |
transcript | EDP08130 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGCAGATGGACCAGACGCCGAACTTCAGCCGGAATCAGCGCGTCATTAAG ATGTACATGTGGCAAATGCTGAGCGGTATCGCCTTCTGCCACTCGCGGCGEST: gi|16434131|gb|BI999357.1|BI999357
genomic: AGCAGATGGACCAGACGCCGAACTTCAGCCGGAATCAGCGCGTCATCAAGgtgtgctagc ... gctcgtgcagATGTACATGTGGCAGATGCTGAGCGGTATCGCCTTCTGCCACTCGCGGCG
EST: AGCAGATGGACCAGACGCCGAACTTCAGCCGGAATCAGCGCGTCATCAAG ATGTACATGTGGCAGATGCTGAGCGGTATCGCCTTCTGCCACTCGCGGCGEST: gi|15701513|gb|BI725818.1|BI725818
genomic: AGCAGATGGACCAGACGCCGAACTTCAGCCGGAATCAGCGCGTCATCAAGgtgtgctagc ... gctcgtgcagATGTACATGTGGCAGATGCTGAGCGGTATCGCCTTCTGCCACTCGCGGCG
EST: AGCAGATGGACCAGACGCCGAACTTCAGCCGGAATCAGCGCGTCATCAAG ATGTACATGTGGCAGATGCTGAGCGGTATCGCCTTCTGCCACTCGCGGCGEST: gi|15694668|gb|BI718973.1|BI718973
genomic: AGCAGATGGACCAGACGCCGAACTTCAGCCGGAATCAGCGCGTCATCAAGgtgtgctagc ... gctcgtgcagATGTACATGTGGCAGATGCTGAGCGGTATCGCCTTCTGCCACTCGCGGCG
EST: AGCAGATGGACCAGACGCCGAACTTCAGCCGGAATCAGCGCGTCATCAAG ATGTACATGTGGCAGATGCTGAGCGGTATCGCCTTCTGCCACTCGCGGCG
genomic: AGCAGATGGACCAGACGCCGAACTTCAGCCGGAATCAGCGCGTCATCAAGgtgtgctagc ... gctcgtgcagATGTACATGTGGCAGATGCTGAGCGGTATCGCCTTCTGCCACTCGCGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGACCGCCGATTGTACTTGGTGTTCGAATTCCTGGACCTGGACCTTAAAAAGCAGATGGACCAGACGCCGAACTTCAGCCGGAATCAGCGCGTCATCAAGgtgtgctagcgggaaaacaagcgggggcaggtggcggcaaaagggcgtcgggtgaagcgccgcaggtgggagctgggtgcgtgctgggtgggaagagtgcgacatggggtttcgccgtcggtaatcttggataaatctggatcgtgaccagaaccttgcgcgctcgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA