1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGTGGAGGGCTCGTTTGACAACTGGACGACGCGACAACCGCTACAAAAGTCCGGAAAGGACTTCACCATCATCAAGCTGCTCCCACCGGGCGTGTACCAGgtgtggcgtggcaatgtggcttggcggcacgactgggcgcggccacctggaactggcacccggcatgtcctctatctaggaggcatgaacacgtgcaggg...
species | Chlamydomonas reinhardtii |
transcript | EDP07873 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCGGAAAGGACTTCACCATCATCAAGCTGCTCCCACCGGGCGTGTACCAG TACAAGTTCATTGTGGACGGCGAGTGGAAGTACGACCCCAACCAGCCTGCCEST: gi|10771030|gb|AV621853.1|AV621853
genomic: CCGGAAAGGACTTCACCATCATCAAGCTGCTCCCACCGGGCGTGTACCAGgtgtggcgtg ... cgccccgcagTACAAGTTCATTGTGGACGGCGAGTGGAAGTACGACCCCAACCAGCCTGCC
EST: CCGGAAAGGACTTCACCATCATCAAGCTGCTCCCACCGGGCGTGTACCAG TACAAGTTCATTGTGGACGGCGAGTGGAAGTACGACCCCAACCAGCCTGCC
genomic: CCGGAAAGGACTTCACCATCATCAAGCTGCTCCCACCGGGCGTGTACCAGgtgtggcgtg ... cgccccgcagTACAAGTTCATTGTGGACGGCGAGTGGAAGTACGACCCCAACCAGCCTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGGAGGGCTCGTTTGACAACTGGACGACGCGACAACCGCTACAAAAGTCCGGAAAGGACTTCACCATCATCAAGCTGCTCCCACCGGGCGTGTACCAGgtgtggcgtggcaatgtggcttggcggcacgactgggcgcggccacctggaactggcacccggcatgtcctctatctaggaggcatgaacacgtgcaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacacgt