1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGCCTTCAAGGAGTTTGCGGCTCGCGATGACATCGCGGTCATCCTTATCTCCCAGCAAGTAGCAGGGCAAATCCGGAACGTCATTGAAGCGCACAACCGGgtgcgtggtttgcagcgggggctgctggcgcggggttggggggtggcgtgtcgctaccaggtgccaacgcggcaaggcggctcaagccccgcgtcaagttctatattttatcctcacccatgcaactgctgtgtccttacctctgtacgcattgtgcactgcatttccgcctgcgcag
species | Chlamydomonas reinhardtii |
transcript | EDP07785 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCCAGCAAGTAGCAGGGCAAATCCGGAACGTCATTGAAGCGCACAACCGG CCGATCCCGGCCGTCCTTGAAATCCCCAGCAAGGACTGCCCCTACGACCCGEST: gi|23364980|gb|BU652800.1|BU652800
genomic: CCCAGCAAGTAGCAGGGCAAATCCGGAACGTCATTGAAGCGCACAACCGGgtgcgtggtt ... gcctgcgcagCCGATCCCGGCCGTCCTTGAAATCCCCAGCAAGGACTGCCCCTACGACCCG
EST: CCCAGCAAGTAGCAGGGCAAATCCGGAACGTCATTGAAGCGCACAACCGG CCGATCCCGGCCGTCCTTGAAATCCCCAGCAAGGACTGCCCCTACGACCCGEST: gi|15700217|gb|BI724522.1|BI724522
genomic: CCCAGCAAGTAGCAGGGCAAATCCGGAACGTCATTGAAGCGCACAACCGGgtgcgtggtt ... gcctgcgcagCCGATCCCGGCCGTCCTTGAAATCCCCAGCAAGGACTGCCCCTACGACCCG
EST: CCCAGCAAGTAGCAGGGCAAATCCGGAACGTCATTGAAGCGCACAACCGG CCGATCCCGGCCGTCCTTGAAATCCCCAGCAAGGACTGCCCCTACGACCCGEST: gi|239841476|gb|GR283333.1|GR283333
genomic: CCCAGCAAGTAGCAGGGCAAATCCGGAACGTCATTGAAGCGCACAACCGGgtgcgtggtt ... gcctgcgcagCCGATCCCGGCCGTCCTTGAAATCCCCAGCAAGGACTGCCCCTACGACCCG
EST: CCCAGCAAGTAGCAGGGCAAATCCGGAACGTCATTGAAGCGCACAACCGG CCGATCCCGGCCGTCCTTGAAATCCCCAGCAAGGACTGCCCCTACGACCCG
genomic: CCCAGCAAGTAGCAGGGCAAATCCGGAACGTCATTGAAGCGCACAACCGGgtgcgtggtt ... gcctgcgcagCCGATCCCGGCCGTCCTTGAAATCCCCAGCAAGGACTGCCCCTACGACCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCCTTCAAGGAGTTTGCGGCTCGCGATGACATCGCGGTCATCCTTATCTCCCAGCAAGTAGCAGGGCAAATCCGGAACGTCATTGAAGCGCACAACCGGgtgcgtggtttgcagcgggggctgctggcgcggggttggggggtggcgtgtcgctaccaggtgccaacgcggcaaggcggctcaagccccgcgtcaagttctatattttatcctcacccatgcaactgctgtgtccttacctctgtacgcattgtgcactgcatttccgcctgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC