1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CACCATCAAGCTGGGCTATGCCAACGCCAAGATCTACCAGTGCGGCAACGCCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAGgtgcgtgcggtacggcagagcgcggctgtggaacctggggcggctgcagctgtgggaggcgccggcaggggaaatgggcagctgggattctcgcgccctcgccgtatcctcccattcatctacccccgcacatacatccatccaaccggccatggcttgcag
species | Chlamydomonas reinhardtii |
transcript | EDP07730 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAG GACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCATGGAGCTGGTEST: gi|14229768|gb|BG848584.1|BG848584
genomic: CCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAGgtgcgtgcgg ... tggcttgcagGACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCATGGAGCTGGT
EST: CCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAG GACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCATGGAGCTGGTCCGCCACEST: gi|10786874|gb|AV643546.1|AV643546
genomic: CCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAGgtgcgtgcgg ... tggcttgcagGACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCATGGAGCTGGTCCGCCAC
EST: CCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAG GACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCAEST: gi|14229769|gb|BG848585.1|BG848585
genomic: CCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAGgtgcgtgcgg ... tggcttgcagGACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCA
EST: CCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAG GACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCATGGAGCTGGTCCGCCACEST: gi|10780657|gb|AV637337.1|AV637337
genomic: CCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAGgtgcgtgcgg ... tggcttgcagGACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCATGGAGCTGGTCCGCCAC
EST: CCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAG GACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCATGGAGCTGGTCCGCCACEST: gi|10793204|gb|AV630570.1|AV630570
genomic: CCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAGgtgcgtgcgg ... tggcttgcagGACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCATGGAGCTGGTCCGCCAC
EST: CCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAG GACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCATGGAGCTGGTEST: gi|14238988|gb|BG857804.1|BG857804
genomic: CCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAGgtgcgtgcgg ... tggcttgcagGACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCATGGAGCTGGT
EST: CCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAG GACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCATGGAGCTGGTCCGCCAC
genomic: CCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAGgtgcgtgcgg ... tggcttgcagGACAACCCGCCCTGCGAGCTGTGCGGCGCTGCCATGGAGCTGGTCCGCCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACCATCAAGCTGGGCTATGCCAACGCCAAGATCTACCAGTGCGGCAACGCCGCCTGCGAGCGGCCATCCTGCTACCGGGCCTACGGCTCGGCCAAGGAGgtgcgtgcggtacggcagagcgcggctgtggaacctggggcggctgcagctgtgggaggcgccggcaggggaaatgggcagctgggattctcgcgccctcgccgtatcctcccattcatctacccccgcacatacatccatccaaccggccatggcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG