1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTGGTGGACGGGTCCCGTGATGTGCTAGTGCGCTTTGATAAGGAGTATGgtgagtgcttggctgggaggggtgcgggaacgttcgagcgataaggcggcgccgaaaacagcaagctaagtcccttgtgaggccccgcccaccgcttgcccaccacgacgcaaaacaccgcaccaccctgcaaatgcctcaccattctttcccttgccgcgctctcacgcacatcag
species | Chlamydomonas reinhardtii |
transcript | EDP07728 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTGGTGGACGGGTCCCGTGATGTGCTAGTGCGCTTTGATAAGGAGTATG CTTGGGGAGATGAGCATGACGCCTTCAAGGACCTGGCGAAGAAGGTGGGCGEST: gi|49467417|gb|BP095330.1|BP095330
genomic: GTGGTGGACGGGTCCCGTGATGTGCTAGTGCGCTTTGATAAGGAGTATGgtgagtgctt ... cgcacatcagCTTGGGGAGATGAGCATGACGCCTTCAAGGACCTGGCGAAGAAGGTGGGCG
EST: GTGGTGGACGGGTCCCGTGATGTGCTAGTGCGCTTTGATAAGGAGTATG CTTGGGGAGATGAGCATGACGCCTTCAAGGACCTGGCGAAGAAGGTGGGCGEST: gi|49461370|gb|BP089283.1|BP089283
genomic: GTGGTGGACGGGTCCCGTGATGTGCTAGTGCGCTTTGATAAGGAGTATGgtgagtgctt ... cgcacatcagCTTGGGGAGATGAGCATGACGCCTTCAAGGACCTGGCGAAGAAGGTGGGCG
EST: GTGGTGGACGGGTCCCGTGATGTGCTAGTGCGCTTTGATAAGGAGTATG CTTGGGGAGATGAGCATGACGCCTTCAAGGACCTGGCGAAGAAGGTGGGCG
genomic: GTGGTGGACGGGTCCCGTGATGTGCTAGTGCGCTTTGATAAGGAGTATGgtgagtgctt ... cgcacatcagCTTGGGGAGATGAGCATGACGCCTTCAAGGACCTGGCGAAGAAGGTGGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGTGGACGGGTCCCGTGATGTGCTAGTGCGCTTTGATAAGGAGTATGgtgagtgcttggctgggaggggtgcgggaacgttcgagcgataaggcggcgccgaaaacagcaagctaagtcccttgtgaggccccgcccaccgcttgcccaccacgacgcaaaacaccgcaccaccctgcaaatgcctcaccattctttcccttgccgcgctctcacgcacatcag
TGGTGG
- GGTGGA
- - - - - - - - - - - - - - - - - - - AAGGAG