1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTACCTGCACGCACATGGGCTTCTGCTCTATACTAGCATTCGTGCTGGTGAAGGGAGGGTTCGTAGAAGCAGTCAACATCACCGCTGACACTTACCTGAGgtgagctggagcgttgcaacggcccacggcggccgtttgacgggtcggtcgtgccaggtggcgggcgcgtggcccgcgctgctgcccgggggcccccgaggacgcgaaactgccgcgtccacgactgactcataacgctgccgtcataacgcaccgccctgcag
species | Chlamydomonas reinhardtii |
transcript | EDP07669 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGGGAGGGTTCGTAGAAGCAGTCAACATCACCGCTGACACTTACCTGAG CTGTATCCTGCCCATCGGCCTGCTGTTCGCGGGCACTCTGTGGCTGGGCAAEST: gi|15695856|gb|BI720161.1|BI720161
genomic: AAGGGAGGGTTCGTAGAAGCAGTCAACATCACCGCTGACACTTACCTGAGgtgagctgga ... cgccctgcagCTGTATCCTGCCCATCGGCCTGCTGTTCGCGGGCACTCTGTGGCTGGGCAA
EST: AAGGGAGGGTTCGTAGAAGCAGTCAACATCACCGCTGACACTTACCTGAG CTGTATCCTGCCCATCGGCCTGCTGTTCGCGGGCACTCTGTGGCTGGGCAAEST: gi|10790752|gb|AV628118.1|AV628118
genomic: AAGGGAGGGTTCGTAGAAGCAGTCAACATCACCGCTGACACTTACCTGAGgtgagctgga ... cgccctgcagCTGTATCCTGCCCATCGGCCTGCTGTTCGCGGGCACTCTGTGGCTGGGCAA
EST: AAGGGAGGGTTCGTAGAAGCAGTCAACATCACCGCTGACACTTACCTGAG CTGTATCCTGCCCATCGGCCTGCTGTTCGCGGGCACTCTGTGGCTGGGCAA
genomic: AAGGGAGGGTTCGTAGAAGCAGTCAACATCACCGCTGACACTTACCTGAGgtgagctgga ... cgccctgcagCTGTATCCTGCCCATCGGCCTGCTGTTCGCGGGCACTCTGTGGCTGGGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTACCTGCACGCACATGGGCTTCTGCTCTATACTAGCATTCGTGCTGGTGAAGGGAGGGTTCGTAGAAGCAGTCAACATCACCGCTGACACTTACCTGAGgtgagctggagcgttgcaacggcccacggcggccgtttgacgggtcggtcgtgccaggtggcgggcgcgtggcccgcgctgctgcccgggggcccccgaggacgcgaaactgccgcgtccacgactgactcataacgctgccgtcataacgcaccgccctgcag
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