1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAACACCGTGGATTTCTACAACGCAGTTAGCATTCTATATGCCACGCTTGAGGAGTTCTGCACGGAGCGGACGTGCGAAGTCATGTCTGCGGGCGGGAAGgtgcgggtgctgagctgggggctgagcggaaagcgtaccaatacacacgtttttactccaacacatgctcgtgtatggggctgatggattgcttggtctg...
species | Chlamydomonas reinhardtii |
transcript | EDP07654 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGGAGTTCTGCACGGAGCGGACGTGCGAAGTCATGTCTGCGGGCGGGAAG TACGAGTACCTGTGGGCGGACGGCGTCAAGGTGAAGAAGCCGGTGCGGTTAEST: gi|16072035|gb|BI874015.1|BI874015
genomic: AGGAGTTCTGCACGGAGCGGACGTGCGAAGTCATGTCTGCGGGCGGGAAGgtgcgggtgc ... cttgtaccagTACGAGTACCTGTGGGCGGACGGCGTCAAGGTGAAGAAGCCGGTGCGGTTA
EST: AGGAGTTCTGCACGGAGCGGACGTGCGAAGTCATGTCTGCGGGCGGGAAG TACGAGTACCTGTGGGCGGACGGCGTCAAGGTGAAGAAGCCGGTGCGGTTAEST: gi|9028072|gb|BE238112.1|BE238112
genomic: AGGAGTTCTGCACGGAGCGGACGTGCGAAGTCATGTCTGCGGGCGGGAAGgtgcgggtgc ... cttgtaccagTACGAGTACCTGTGGGCGGACGGCGTCAAGGTGAAGAAGCCGGTGCGGTTA
EST: AGGAGTTCTGCACGGAGCGGACGTGCGAAGTCATGTCTGCGGGCGGGAAG TACGAGTACCTGTGGGCGGACGGCGTCAAGGTGAAGAAGCCGGTGCGGTTA
genomic: AGGAGTTCTGCACGGAGCGGACGTGCGAAGTCATGTCTGCGGGCGGGAAGgtgcgggtgc ... cttgtaccagTACGAGTACCTGTGGGCGGACGGCGTCAAGGTGAAGAAGCCGGTGCGGTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACACCGTGGATTTCTACAACGCAGTTAGCATTCTATATGCCACGCTTGAGGAGTTCTGCACGGAGCGGACGTGCGAAGTCATGTCTGCGGGCGGGAAGgtgcgggtgctgagctgggggctgagcggaaagcgtaccaatacacacgtttttactccaacacatgctcgtgtatggggctgatggattgcttggtctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggtct