Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgcttggcttcggcgtgcttcggaaggctcgttgcttacttcccctcattacctgcgtgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP07421
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10768800|gb|AV619625.1|AV619625
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|10768260|gb|AV619085.1|AV619085
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|49459062|gb|BP086975.1|BP086975
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|7413146|gb|AW651900.1|AW651900
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|22073524|gb|BQ822862.1|BQ822862
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|14237426|gb|BG856242.1|BG856242
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|10771442|gb|AV622265.1|AV622265
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGC
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGC
EST: gi|22054816|gb|BQ811537.1|BQ811537
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|49464081|gb|BP091994.1|BP091994
EST:     GCTGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACTGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GC-GGCAAGCCTGCAGCCAAGCTGGAGCAGGAGAC-GGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|14230368|gb|BG849184.1|BG849184
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|10779492|gb|AV636172.1|AV636172
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|10774073|gb|AV624896.1|AV624896
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|10789616|gb|AV626981.1|AV626981
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|22058706|gb|BQ813076.1|BQ813076
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|10793411|gb|AV630777.1|AV630777
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|22054862|gb|BQ811558.1|BQ811558
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|9460035|gb|BE453031.1|BE453031
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|10768483|gb|AV619308.1|AV619308
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|22068291|gb|BQ818230.1|BQ818230
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|6546860|gb|AV392644.1|AV392644
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|6547171|gb|AV392955.1|AV392955
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|49463369|gb|BP091282.1|BP091282
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|15368469|gb|BI527895.1|BI527895
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|49469600|gb|BP097461.1|BP097461
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|22061490|gb|BQ814287.1|BQ814287
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCA-GCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|14234820|gb|BG853636.1|BG853636
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|49464364|gb|BP092277.1|BP092277
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|22049570|gb|BQ808855.1|BQ808855
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|49459353|gb|BP087266.1|BP087266
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGA
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGA
EST: gi|49458786|gb|BP086699.1|BP086699
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|14240460|gb|BG859276.1|BG859276
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|22069541|gb|BQ819108.1|BQ819108
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|10771832|gb|AV622655.1|AV622655
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|49458226|gb|BP086139.1|BP086139
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|10126127|gb|BE724831.1|BE724831
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|6544005|gb|AV389789.1|AV389789
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTC
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTC
EST: gi|10791438|gb|AV628804.1|AV628804
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|14238923|gb|BG857739.1|BG857739
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|49459305|gb|BP087218.1|BP087218
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|22072369|gb|BQ821707.1|BQ821707
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCAC
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCAC
EST: gi|49459607|gb|BP087520.1|BP087520
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|22062921|gb|BQ815004.1|BQ815004
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|49458703|gb|BP086616.1|BP086616
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|49462920|gb|BP090833.1|BP090833
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|22049569|gb|BQ808854.1|BQ808854
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|10778538|gb|AV635218.1|AV635218
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|22075787|gb|BQ824563.1|BQ824563
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|16072973|gb|BI874969.1|BI874969
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
EST: gi|49461876|gb|BP089789.1|BP089789
EST:     GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATC                         ACGAGCGCGTGTCTTCGAATCTCAAGCAGCAGATTGTGCAGGCGCGCACGG
genomic: GAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgctt ... ctgcgtgcagACGAGCGCGTGTCTTCGAACCTCAAGCAGCAGATTGTGCAGGCGCGCACGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTAACGCTGGAAAGAACAAGCCTGGTGCGGCTCAGACTGTGAGCGGCAAGCCTGCAGCCAAGCTGGAGCAGGAGACGGAGGACTTCCATCgtaagtgcttggcttcggcgtgcttcggaaggctcgttgcttacttcccctcattacctgcgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA