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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGCCCCCAAGCTCAAGGTGGCGATTGTGGGCGGTGGCCTGGCGGGTCTGTCCACGGCCGTGGAGCTGCTGGACCAGGGgtgagcggcgcgtggcgcggcgttgcggggtggtgcggcgtgggggggggggtgcccgcggcacgctgacccgcatttactggccgtaaggcggtacaca...

Basic information

species Chlamydomonas reinhardtii
transcript EDP07040
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15695978|gb|BI720283.1|BI720283
EST:     GGCGGTGGCCTGGCGGGTCTGTCCACGGCCGTGGAGCTGCTGGACCAGGG                         GTATGAGGTGGACATCTACGAGGGCCGCCAGTGGATTGGTGGTAAGGTGGC
genomic: GGCGGTGGCCTGGCGGGTCTGTCCACGGCCGTGGAGCTGCTGGACCAGGGgtgagcggcg ... aacatctcagGTATGAGGTGGACATCTACGAGGGCCGCCAGTGGATTGGTGGTAAGGTGGC
EST: gi|10791803|gb|AV629169.1|AV629169
EST:     GGCGGTGGCCTGGCGGGTCTGTCCACGGCCGTGGAGCTGCTGGACCAGGG                         GTATGAGGTGGACATCTACGAGGGCCGCCAGTGGATTGGTGGTAAGGTGGC
genomic: GGCGGTGGCCTGGCGGGTCTGTCCACGGCCGTGGAGCTGCTGGACCAGGGgtgagcggcg ... aacatctcagGTATGAGGTGGACATCTACGAGGGCCGCCAGTGGATTGGTGGTAAGGTGGC
EST: gi|15699188|gb|BI723493.1|BI723493
EST:     GGCGGTGGCCTGGCGGGTCTGTCCACGGCCGTGGAGCTGCTGGACCAGGG                         GTATGAGGTGGACATCTACGAGGGCCGCCAGTGGATTGGTGGTAAGGTGGC
genomic: GGCGGTGGCCTGGCGGGTCTGTCCACGGCCGTGGAGCTGCTGGACCAGGGgtgagcggcg ... aacatctcagGTATGAGGTGGACATCTACGAGGGCCGCCAGTGGATTGGTGGTAAGGTGGC
EST: gi|49467273|gb|BP095186.1|BP095186
EST:     GGCGGTGGCCTGGCGGGTCTGTCCACGGCCGTGGAGCTGCTGGACCAGTG                         GTATGAGGTGGACATCTACGAGGGCCGCCAGTGGATTGGTGGTAAGGTGGC
genomic: GGCGGTGGCCTGGCGGGTCTGTCCACGGCCGTGGAGCTGCTGGACCAGGGgtgagcggcg ... aacatctcagGTATGAGGTGGACATCTACGAGGGCCGCCAGTGGATTGGTGGTAAGGTGGC
EST: gi|15699186|gb|BI723491.1|BI723491
EST:     GGCGGTGGCCTGGCGGGTCTGTCCACGGCCGTGGAGCTGCTGGACCAGGG                         GTATGAGGTGGACATCTACGAGGGCCGCCAGTGGATTGGTGGTAAGGTGGC
genomic: GGCGGTGGCCTGGCGGGTCTGTCCACGGCCGTGGAGCTGCTGGACCAGGGgtgagcggcg ... aacatctcagGTATGAGGTGGACATCTACGAGGGCCGCCAGTGGATTGGTGGTAAGGTGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCGCCCCCAAGCTCAAGGTGGCGATTGTGGGCGGTGGCCTGGCGGGTCTGTCCACGGCCGTGGAGCTGCTGGACCAGGGgtgagcggcgcgtggcgcggcgttgcggggtggtgcggcgtgggggggggggtgcccgcggcacgctgacccgcatttactggccgtaaggcggtacaca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acccgca