1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCGGAGATTTACCGCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAGgtgagctttctagcaagggtgacggggagaggggaaggagggcaggtgcgggggttccgggggggagcagcacgacccgatgcaaagctgggagagagcc...
species | Chlamydomonas reinhardtii |
transcript | EDP06728 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAG GAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACCEST: gi|22063534|gb|BQ815265.1|BQ815265
genomic: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAGgtgagctttc ... aaacacgcagGAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACC
EST: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAG GAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACCEST: gi|10768806|gb|AV619631.1|AV619631
genomic: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAGgtgagctttc ... aaacacgcagGAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACC
EST: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGACCTCCATCATCCAG GAGACGCTCAAGTCGGTCAEST: gi|161814815|gb|FC100657.1|FC100657
genomic: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAGgtgagctttc ... aaacacgcagGAGACGCTCAAGTCGGTCA
EST: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAG GAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACCEST: gi|22072634|gb|BQ821972.1|BQ821972
genomic: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAGgtgagctttc ... aaacacgcagGAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACC
EST: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAG GAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACCEST: gi|22050250|gb|BQ809141.1|BQ809141
genomic: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAGgtgagctttc ... aaacacgcagGAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACC
EST: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAG GAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACCEST: gi|22068051|gb|BQ818019.1|BQ818019
genomic: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAGgtgagctttc ... aaacacgcagGAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACC
EST: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAG GAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACCEST: gi|22055652|gb|BQ811951.1|BQ811951
genomic: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAGgtgagctttc ... aaacacgcagGAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACC
EST: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAG GAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACCEST: gi|22050251|gb|BQ809142.1|BQ809142
genomic: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAGgtgagctttc ... aaacacgcagGAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACC
EST: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAG GAGACGCTCAAGTCGGTCATTGCGCAGTACAEST: gi|10780162|gb|AV636842.1|AV636842
genomic: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAGgtgagctttc ... aaacacgcagGAGACGCTCAAGTCGGTCATTGCGCAGTACA
EST: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAG GAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCEST: gi|15696927|gb|BI721232.1|BI721232
genomic: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAGgtgagctttc ... aaacacgcagGAGACGCTCAAGTCGGTCATTGCGCAGTACAACGC
EST: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAG GAGACGCTCAAGTEST: gi|15369591|gb|BI529017.1|BI529017
genomic: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAGgtgagctttc ... aaacacgcagGAGACGCTCAAGT
EST: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAG GAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACCEST: gi|161821633|gb|FC108134.1|FC108134
genomic: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAGgtgagctttc ... aaacacgcagGAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACC
EST: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAG GAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACCEST: gi|22067190|gb|BQ817392.1|BQ817392
genomic: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAGgtgagctttc ... aaacacgcagGAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACC
EST: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAG GAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACCEST: gi|22064606|gb|BQ815890.1|BQ815890
genomic: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAGgtgagctttc ... aaacacgcagGAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACC
EST: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAG GAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACCEST: gi|22070334|gb|BQ819715.1|BQ819715
genomic: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAGgtgagctttc ... aaacacgcagGAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACC
EST: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAG GAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACCEST: gi|22073537|gb|BQ822875.1|BQ822875
genomic: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAGgtgagctttc ... aaacacgcagGAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACC
EST: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAG GAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACCEST: gi|22074365|gb|BQ823420.1|BQ823420
genomic: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAGgtgagctttc ... aaacacgcagGAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACC
EST: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAG GAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACCEST: gi|23364284|gb|BU652104.1|BU652104
genomic: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAGgtgagctttc ... aaacacgcagGAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACC
EST: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAG GAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACCEST: gi|161801894|gb|FC090730.1|FC090730
genomic: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAGgtgagctttc ... aaacacgcagGAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACC
EST: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAG GAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACCEST: gi|22071207|gb|BQ820545.1|BQ820545
genomic: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAGgtgagctttc ... aaacacgcagGAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACC
EST: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAG GAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACC
genomic: GCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAGgtgagctttc ... aaacacgcagGAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCAGCCAGCTCATCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCCGGAGATTTACCGCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCAGgtgagctttctagcaagggtgacggggagaggggaaggagggcaggtgcgggggttccgggggggagcagcacgacccgatgcaaagctgggagagagcc
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