1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTGGACAGTATGTCCGTTCGCGCACCCTGGCGAGAAGGCTAAGCGCCGGGACCCTCGCGTGTTCACCTACACTGGCGTCGCGTGCCCGGATATGAAGAAGgtgaggcgaaggccttcaagcgaacgcgccgaaaagacagtccgtcactccacgtcagccccagacccgcgccgagcggcttccctagtgtgcattgatatatggcaactcatcgcgtattcggtggcggctatcggggcgtcaatgctgggcggcttgattaagttgttgactttcgttcggatgccctcgcag
species | Chlamydomonas reinhardtii |
transcript | EDP05922 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACCCTCGCGTGTTCACCTACACTGGCGTCGCGTGCCCGGATATGAAGAAG TGCCAACGCGGAGACGCGTGCCCATACGCGCACAACGTGTTCGAGTACTGGEST: gi|10783076|gb|AV639748.1|AV639748
genomic: ACCCTCGCGTGTTCACCTACACTGGCGTCGCGTGCCCGGATATGAAGAAGgtgaggcgaa ... gccctcgcagTGCCAACGCGGAGACGCGTGCCCATACGCGCACAACGTGTTCGAGTACTGG
EST: ACCCTCGCGTGTTCACCTACACTGGCGTCGCGTGCCCGGATATGAAGAAG TGCCAACGCGGAGACGCGTGCCCATACGCGCACAACGTGTTCGAGTACTGGEST: gi|10786272|gb|AV642944.1|AV642944
genomic: ACCCTCGCGTGTTCACCTACACTGGCGTCGCGTGCCCGGATATGAAGAAGgtgaggcgaa ... gccctcgcagTGCCAACGCGGAGACGCGTGCCCATACGCGCACAACGTGTTCGAGTACTGG
EST: ACCCTCGCGTGTTCACCTACACTGGCGTCGCGTGCCCGGATATGAAGAAG TGCCAACGCGGAGACGCGTGCCCATACGCGCACAACGTGTTCGAGTACTGG
genomic: ACCCTCGCGTGTTCACCTACACTGGCGTCGCGTGCCCGGATATGAAGAAGgtgaggcgaa ... gccctcgcagTGCCAACGCGGAGACGCGTGCCCATACGCGCACAACGTGTTCGAGTACTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGGACAGTATGTCCGTTCGCGCACCCTGGCGAGAAGGCTAAGCGCCGGGACCCTCGCGTGTTCACCTACACTGGCGTCGCGTGCCCGGATATGAAGAAGgtgaggcgaaggccttcaagcgaacgcgccgaaaagacagtccgtcactccacgtcagccccagacccgcgccgagcggcttccctagtgtgcattgatatatggcaactcatcgcgtattcggtggcggctatcggggcgtcaatgctgggcggcttgattaagttgttgactttcgttcggatgccctcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG