1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACTTTGGGCTGGGCGTGTTCTTCAAGCCCGGCGAGCGCTTCCGTGACCTGGTGGGGAGTCCATACTACGTGGCGCCCGAGGTGCTGCGCAAGAACTACAGgtgtgtgcgccccgccagcagccgccggggttcgtcgggccacggtagcattcacacgcgcctgcacacatcgcagcatcgtgtctcttgagcgtgtgttgggtgtgtacgagaggcggggctcttgtttagcgggtatgtgcttgctgtgtcgctatgcgcgcag
species | Chlamydomonas reinhardtii |
transcript | EDP05903 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTGGGGAGTCCATACTACGTGGCGCCCGAGGTGCTGCGCAAGAACTACAG CCACGAGGCGGACATGTGGAGTCTGGGCGTCATTCTATACATCCTGCTGTCEST: gi|161808978|gb|FC099584.1|FC099584
genomic: GTGGGGAGTCCATACTACGTGGCGCCCGAGGTGCTGCGCAAGAACTACAGgtgtgtgcgc ... atgcgcgcagCCACGAGGCGGACATGTGGAGTCTGGGCGTCATTCTATACATCCTGCTGTC
EST: GTGGGGAGTCCGTACTACGTGGCGCCCGAGGTGCTGCGCAAGAACTACAG CCACGAGGCGGACATGTGGAGTCTGGGCGTCATTCTATACATCCTGCTGTCEST: gi|161815943|gb|FC103508.1|FC103508
genomic: GTGGGGAGTCCATACTACGTGGCGCCCGAGGTGCTGCGCAAGAACTACAGgtgtgtgcgc ... atgcgcgcagCCACGAGGCGGACATGTGGAGTCTGGGCGTCATTCTATACATCCTGCTGTC
EST: TTGGGGAGTCCGTACTACGTGGCGCCCGAGGTGCTGCGCAAGAACTACAT CCACGAGGCCCACATGTGGAGTCTGGGCGTCATTCTATACATCCTGCTGTC
genomic: GTGGGGAGTCCATACTACGTGGCGCCCGAGGTGCTGCGCAAGAACTACAGgtgtgtgcgc ... atgcgcgcagCCACGAGGCGGACATGTGGAGTCTGGGCGTCATTCTATACATCCTGCTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTTGGGCTGGGCGTGTTCTTCAAGCCCGGCGAGCGCTTCCGTGACCTGGTGGGGAGTCCATACTACGTGGCGCCCGAGGTGCTGCGCAAGAACTACAGgtgtgtgcgccccgccagcagccgccggggttcgtcgggccacggtagcattcacacgcgcctgcacacatcgcagcatcgtgtctcttgagcgtgtgttgggtgtgtacgagaggcggggctcttgtttagcgggtatgtgcttgctgtgtcgctatgcgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC