1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGGGCCTGGACGTGGTCCACAGCAACCCCTACGTCTCCTATCCCGTGCTGGTAACCGGCGGCCTGCTGCTGCTACCCAgtgagtagctggatcatagaggacactcagacggggaccccgcgctgcacggtcattgccacgcctttacggcggggttatgctctcgcatgccatgtccagccgcgttagagacagggggacagccggagcgtgcaagcatgcagaggattccatcgaacgcttcatatatgctgtccgcag
species | Chlamydomonas reinhardtii |
transcript | EDP05753 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTACGTCTCCTATCCCGTGCTGGTAACCGGCGGCCTGCTGCTGCTACCCA CGACCCGTCGGCTGCTGTACCCGGCGACGCTGGGGCGACEST: gi|15371873|gb|BI531299.1|BI531299
genomic: CTACGTCTCCTATCCCGTGCTGGTAACCGGCGGCCTGCTGCTGCTACCCAgtgagtagct ... ctgtccgcagCGACCCGTCGGCTGCTGTACCGGGCGACGCTGGGGCGAC
EST: CTACGTCTCCTATCCCGTGCTGGTAACCGGCGGCCTGCTGCTGCTACCCA CGACCCGTCGGCTGCTGTACCGGGCGACGCTGGGGCGACTGCGCAGCCCGGEST: gi|15372795|gb|BI532221.1|BI532221
genomic: CTACGTCTCCTATCCCGTGCTGGTAACCGGCGGCCTGCTGCTGCTACCCAgtgagtagct ... ctgtccgcagCGACCCGTCGGCTGCTGTACCGGGCGACGCTGGGGCGACTGCGCAGCCCGG
EST: CTACGTCTCCTATCCCGTGCTGGTAACCGGCGGCCTGCTGCTGCTACCCA CGACCCGTCGGCTGCTGTACCGGGCGACGCTGGGGCGACTGCGCAGCCCGGEST: gi|16435548|gb|BM000768.1|BM000768
genomic: CTACGTCTCCTATCCCGTGCTGGTAACCGGCGGCCTGCTGCTGCTACCCAgtgagtagct ... ctgtccgcagCGACCCGTCGGCTGCTGTACCGGGCGACGCTGGGGCGACTGCGCAGCCCGG
EST: CTACGTCTCCTATCCCGTGCTGGTAACCGGCGGCCTGCTGCTGCTACCCA CGACCCGTCGGCTGCTGTACCGGGCGACGCTGGGGCGACTGCGCEST: gi|15695033|gb|BI719354.1|BI719354
genomic: CTACGTCTCCTATCCCGTGCTGGTAACCGGCGGCCTGCTGCTGCTACCCAgtgagtagct ... ctgtccgcagCGACCCGTCGGCTGCTGTACCGGGCGACGCTGGGGCGACTGCGC
EST: CTACGTCTCCTATCCCGTGCTGGTAACCGGCGGCCTGCTGCTGCTACCCA CGACCCGTCGGCTGCTGTACCGGGCGACGCTGGGGCGACTGCGCAGCCCGGEST: gi|15370010|gb|BI529436.1|BI529436
genomic: CTACGTCTCCTATCCCGTGCTGGTAACCGGCGGCCTGCTGCTGCTACCCAgtgagtagct ... ctgtccgcagCGACCCGTCGGCTGCTGTACCGGGCGACGCTGGGGCGACTGCGCAGCCCGG
EST: CTACGTCTCCTATCCCGTGCTGGTAACCGGCGGCCTGCTGCTGCTACCCA CGACCCGTCGGCTGCTGTACCGGGCGACGCTGGGGCGACTGCGCAGCCCGG
genomic: CTACGTCTCCTATCCCGTGCTGGTAACCGGCGGCCTGCTGCTGCTACCCAgtgagtagct ... ctgtccgcagCGACCCGTCGGCTGCTGTACCGGGCGACGCTGGGGCGACTGCGCAGCCCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGCCTGGACGTGGTCCACAGCAACCCCTACGTCTCCTATCCCGTGCTGGTAACCGGCGGCCTGCTGCTGCTACCCAgtgagtagctggatcatagaggacactcagacggggaccccgcgctgcacggtcattgccacgcctttacggcggggttatgctctcgcatgccatgtccagccgcgttagagacagggggacagccggagcgtgcaagcatgcagaggattccatcgaacgcttcatatatgctgtccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT