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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGACGACCTGCGCGGGACGCCCCTGAGTGTGGGCACCCTGGAGGAGATTATTGATGAGAAgtgaggattggaggactgacgaatcctggggcgggtggtgttatgtcaagagacaaggtttgccagcatgacaggctgccgctccttggttgggtgtggt...

Basic information

species Chlamydomonas reinhardtii
transcript EDP05705
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161817032|gb|FC105457.1|FC105457
EST:     CGCGGGACGCCCCTGAGTGTGGGCACCCTGGAGGAGATTATTGATGAGAA                         CCACGCAATTGTGTCCTCGTCGGTGGGCCCCGAGTACTACGTGTGCATCCT
genomic: CGCGGGACGCCCCTGAGTGTGGGCACCCTGGAGGAGATTATTGATGAGAAgtgaggattg ... ctccccccagCCACGCAATTGTGTCCTCGTCGGTGGGCCCCGAGTACTACGTGTGCATCCT
EST: gi|16437814|gb|BM003034.1|BM003034
EST:     CGCGGGACGCCCCTGAGTGTGGGCACCCTGGAGGAGATTATTGATGAGAA                         CCACGCAATTGTGTCCTCGTCGGTGGGCCCCGAGTACTACGTGTGCATCCT
genomic: CGCGGGACGCCCCTGAGTGTGGGCACCCTGGAGGAGATTATTGATGAGAAgtgaggattg ... ctccccccagCCACGCAATTGTGTCCTCGTCGGTGGGCCCCGAGTACTACGTGTGCATCCT
EST: gi|15368325|gb|BI527751.1|BI527751
EST:     CGCGGGACGCCCCTGAGTGTGGGCACCCTGGAGGAGATTATTGATGAGAA                         CCACGCAATTGTGTCCTCGTCGGTGGGCCCCGAGTACTACGTGTGCATCCT
genomic: CGCGGGACGCCCCTGAGTGTGGGCACCCTGGAGGAGATTATTGATGAGAAgtgaggattg ... ctccccccagCCACGCAATTGTGTCCTCGTCGGTGGGCCCCGAGTACTACGTGTGCATCCT
EST: gi|14225963|gb|BG844779.1|BG844779
EST:     CGCGGGACGCCCCTGAGTGTGGGCACCCTGGAGGAGATTATTGATGAGAA                         CCACGCAATTGTGTCCTCGTCGGTGGGCCCCGAGTACTACGTGTGCATCCT
genomic: CGCGGGACGCCCCTGAGTGTGGGCACCCTGGAGGAGATTATTGATGAGAAgtgaggattg ... ctccccccagCCACGCAATTGTGTCCTCGTCGGTGGGCCCCGAGTACTACGTGTGCATCCT
EST: gi|15695862|gb|BI720167.1|BI720167
EST:     CGCGGGACGCCCCTGAGTGTGGGCACCCTGGAGGAGATTATTGATGAGAA                         CCACGCAATTGTGTCCTCGTCGGTGGGCCCCGAGTACTACGTGTGCATCCT
genomic: CGCGGGACGCCCCTGAGTGTGGGCACCCTGGAGGAGATTATTGATGAGAAgtgaggattg ... ctccccccagCCACGCAATTGTGTCCTCGTCGGTGGGCCCCGAGTACTACGTGTGCATCCT
EST: gi|10126813|gb|BE725517.1|BE725517
EST:     CGCGGGACGCCCCTGAGTGTGGGCACCCTGGAGGAGATTATTGATGAGAA                         CCACGCAATTGTGT
genomic: CGCGGGACGCCCCTGAGTGTGGGCACCCTGGAGGAGATTATTGATGAGAAgtgaggattg ... ctccccccagCCACGCAATTGTGT
EST: gi|15693748|gb|BI718053.1|BI718053
EST:     CGCGGGACGCCCCTGAGTGTGGGCACCCTGGAGGAGATTATTGATGAGAA                         CCACGCAATTGTGTCCTCGTCGGTGGGCCCCGAGTACTACGTGTGCATCCT
genomic: CGCGGGACGCCCCTGAGTGTGGGCACCCTGGAGGAGATTATTGATGAGAAgtgaggattg ... ctccccccagCCACGCAATTGTGTCCTCGTCGGTGGGCCCCGAGTACTACGTGTGCATCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGACGACCTGCGCGGGACGCCCCTGAGTGTGGGCACCCTGGAGGAGATTATTGATGAGAAgtgaggattggaggactgacgaatcctggggcgggtggtgttatgtcaagagacaaggtttgccagcatgacaggctgccgctccttggttgggtgtggt

- - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggtgt