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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGAGGAGGTGAAGCCGCTGGTGTTCCAGATCCCGGAGCTGGCGGTGCTGCGCTGCCGCGTGGACGCCATCGCCACCGCCACCAGCGTCATCCCCACGgtgcgtgagtcgggcgcaggggcggggtgcgagcgaggcaagccgcggtagggatagaggtatgggggggctgccctggcaggtattgtatagagcgcaa...

Basic information

species Chlamydomonas reinhardtii
transcript EDP05700
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10771751|gb|AV622574.1|AV622574
EST:     TGCGCTGCCGCGTGGACGCCATCGCCACCGCCACCAGCGTCATCCCCACG                         GACTCGACAATCCTCAACGCCGCCAGCCAGGTGGTGCCCAACCGCCTGTTC
genomic: TGCGCTGCCGCGTGGACGCCATCGCCACCGCCACCAGCGTCATCCCCACGgtgcgtgagt ... atcctcgcagGACTCGACAATCCTCAACGCCGCCAGCCAGGTGGTGCCCAACCGCCTGTTC
EST: gi|14232502|gb|BG851318.1|BG851318
EST:     TGCGCTGCCGCGTGGACGCCATCGCCACCGCCACCAGCGTCATCCCCACG                         GACTCGACAATCCTCAACGCCGCCAGCCCAGGTGGTGCCCAACCTGCCTGT
genomic: TGCGCTGCCGCGTGGACGCCATCGCCACCGCCACCAGCGTCATCCCCACGgtgcgtgagt ... atcctcgcagGACTCGACAATCCTCAACGCCGCCAGCC-AGGTGGTGCCCAACC-GCCTGT
EST: gi|15693236|gb|BI717541.1|BI717541
EST:     TGCGCTGCCGCGTGGACGCCATCGCCACCGCCACCAGCGTCATCCCCACG                         GACTCGACAATCCTCAACGCCGCCAGCCAGGTG
genomic: TGCGCTGCCGCGTGGACGCCATCGCCACCGCCACCAGCGTCATCCCCACGgtgcgtgagt ... atcctcgcagGACTCGACAATCCTCAACGCCGCCAGCCAGGTG
EST: gi|161811168|gb|FC095319.1|FC095319
EST:     TGCGCTGCCGCGTGGACGCCATCGCCACCGCCACCAGCGTCATCCCCACG                         GACTCGACAATTCTCAACGCCGCCAGCCAGGTGGTGCCCAACCGCCTGTTC
genomic: TGCGCTGCCGCGTGGACGCCATCGCCACCGCCACCAGCGTCATCCCCACGgtgcgtgagt ... atcctcgcagGACTCGACAATCCTCAACGCCGCCAGCCAGGTGGTGCCCAACCGCCTGTTC
EST: gi|14229783|gb|BG848599.1|BG848599
EST:     TGCGCTGCCGCGTGGACGCCATCGCCACCGCCACCAGCGTCATCCCCACG                         GACTCGANCA-TCCTCAACGCCGCCAGCCAGGTGGTGCCCAACCGCCTGTT
genomic: TGCGCTGCCGCGTGGACGCCATCGCCACCGCCACCAGCGTCATCCCCACGgtgcgtgagt ... atcctcgcagGACTCGA-CAATCCTCAACGCCGCCAGCCAGGTGGTGCCCAACCGCCTGTT
EST: gi|14229784|gb|BG848600.1|BG848600
EST:     TGCGCTGCCGCGTGGACGCCATCGCCACCGCCACCAGCGTCATCCNCACG                         GACTCGACAATCCTCAACGCCGCCAGCCAGGTGGTGCCCAACCGCCTGTTC
genomic: TGCGCTGCCGCGTGGACGCCATCGCCACCGCCACCAGCGTCATCCCCACGgtgcgtgagt ... atcctcgcagGACTCGACAATCCTCAACGCCGCCAGCCAGGTGGTGCCCAACCGCCTGTTC
EST: gi|14232893|gb|BG851709.1|BG851709
EST:     TGCGCTGCCGCGTGGACGCCATCGNCACCGGCACCAGCGTCATCCCCACG                         GACTCGACCATCCTCAACGCCGGCAGCCAGGTGG
genomic: TGCGCTGCCGCGTGGACGCCATCGCCACCGCCACCAGCGTCATCCCCACGgtgcgtgagt ... atcctcgcagGACTCGACAATCCTCAACGCCGCCAGCCAGGTGG
EST: gi|23363951|gb|BU651771.1|BU651771
EST:     TGCGCTGCCGCGTGGACGCCATCGCCACCGCCACCAGCGTCATCCCCACG                         GACTCGACAATCCTCAACGCCGCCAGCCAGGTGGTGCCCAACCGCCTGTTC
genomic: TGCGCTGCCGCGTGGACGCCATCGCCACCGCCACCAGCGTCATCCCCACGgtgcgtgagt ... atcctcgcagGACTCGACAATCCTCAACGCCGCCAGCCAGGTGGTGCCCAACCGCCTGTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGGAGGAGGTGAAGCCGCTGGTGTTCCAGATCCCGGAGCTGGCGGTGCTGCGCTGCCGCGTGGACGCCATCGCCACCGCCACCAGCGTCATCCCCACGgtgcgtgagtcgggcgcaggggcggggtgcgagcgaggcaagccgcggtagggatagaggtatgggggggctgccctggcaggtattgtatagagcgcaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagtcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attgtat