1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CACACTGCTGGACAACACCAGCATCACGCTGCTGGACATCTCCGGCAACCGCATGGGGCCGGTGGGCAGCAAGGCGCTGGCGGACCTGCTGGTGTCGCGGgtgcgtcgggttgtgggcgaggccgccgggcagggccagggcgcggcgtggaatggcatgtatgaatgatgcttgggccgcatggatgcgttcagccgtg...
species | Chlamydomonas reinhardtii |
transcript | EDP05639 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCATGGGGCCGGTGGGCAGCAAGGCGCTGGCGGACCTGCTGGTGTCGCGG AACACTGTGCTGCGCACGCTGGCGCTAGCCAACATGAAGCTGGGCGACCGCEST: gi|16431400|gb|BI996626.1|BI996626
genomic: GCATGGGGCCGGTGGGCAGCAAGGCGCTGGCGGACCTGCTGGTGTCGCGGgtgcgtcggg ... ccctggacagAACACTGTGCTGCGCACGCTGGCGCTAGCCAACATGAAGCTGGGCGACCGC
EST: GCATGGGGCCGGTGGGCAGCAAGGCGCTGGCGGACCTGCTGGTGTCGCGG AACACTGTGCTGCGCACGCTGGCGCTAGCCAACATEST: gi|22076517|gb|BQ825293.1|BQ825293
genomic: GCATGGGGCCGGTGGGCAGCAAGGCGCTGGCGGACCTGCTGGTGTCGCGGgtgcgtcggg ... ccctggacagAACACTGTGCTGCGCACGCTGGCGCTAGCCAACAT
EST: GCATGGGGCCGGTGGGCAGCAAGGCGCTGGCGGACCTGCTGGTGTCGCGG AACACTGTGCTGCGCACGCTGGCGCTAGCCAACATGAAGCTGGGCGACCGCEST: gi|14234450|gb|BG853266.1|BG853266
genomic: GCATGGGGCCGGTGGGCAGCAAGGCGCTGGCGGACCTGCTGGTGTCGCGGgtgcgtcggg ... ccctggacagAACACTGTGCTGCGCACGCTGGCGCTAGCCAACATGAAGCTGGGCGACCGC
EST: GCATGGGGCCGGTGGGCAGCAAGGCGCTGGCGGACCTGCTGGTGTCGCGG AACACTGTGCTGCGCACGCTGGCGCTAGCCAACATGAAGCTGGGCGACCGC
genomic: GCATGGGGCCGGTGGGCAGCAAGGCGCTGGCGGACCTGCTGGTGTCGCGGgtgcgtcggg ... ccctggacagAACACTGTGCTGCGCACGCTGGCGCTAGCCAACATGAAGCTGGGCGACCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACACTGCTGGACAACACCAGCATCACGCTGCTGGACATCTCCGGCAACCGCATGGGGCCGGTGGGCAGCAAGGCGCTGGCGGACCTGCTGGTGTCGCGGgtgcgtcgggttgtgggcgaggccgccgggcagggccagggcgcggcgtggaatggcatgtatgaatgatgcttgggccgcatggatgcgttcagccgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggatgc