1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTGTGCACGGGCGCCAAGAGCGAGGATGACTCCCGCACGGCCGCGCGTCGTgtaagtacctagatgttgccgccctacctgctgggtgtagcagcggtgcctttgctacactgcgtcactgctctcgggagcgtggagcgggctaatcagg...
species | Chlamydomonas reinhardtii |
transcript | EDP05450 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCAAGAGCGAGGATGACTCCCGCACGGCCGCGCGTCGT TACGCCAAGATTGTACAGAAGCTGGGCTTCCCTGCCACGTTCAAGGAGTTTEST: gi|15695028|gb|BI719349.1|BI719349
genomic: CCAAGAGCGAGGATGACTCCCGCACGGCCGCGCGTCGTgtaagtacct ... ggtcgtgcagTACGCCAAGATTGTACAGAAGCTGGGCTTCCCTGCCACGTTCAAGGAGTTT
EST: TGTGCACGGGCGCCAAGAGCGAGGATGACTCCCGCACGGCCGCGCGTCGT TACGCCAAGATTGTACAGAAGCTGGGCEST: gi|14226210|gb|BG845026.1|BG845026
genomic: TGTGCACGGGCGCCAAGAGCGAGGATGACTCCCGCACGGCCGCGCGTCGTgtaagtacct ... ggtcgtgcagTACGCCAAGATTGTACAGAAGCTGGGC
EST: TGTGCACNGGCGCCAAGAGCGAGGATGACTCCCGCACGGCCGCGCGTCGT TACGCCAAGATTGTACAGAAGCTGGGCTTCCCTGCCACGTTCAAGGAGTT-EST: gi|14226211|gb|BG845027.1|BG845027
genomic: TGTGCACGGGCGCCAAGAGCGAGGATGACTCCCGCACGGCCGCGCGTCGTgtaagtacct ... ggtcgtgcagTACGCCAAGATTGTACAGAAGCTGGGCTTCCCTGCCACGTTCAAGGAGTTT
EST: TGTGCACGGGCGCCAAGAGCGAGGATGACTCCCGCACGGCCGCGCGTCGT TACGCCAAGATTGTACAGAAGCTGGGCTTCCCTGCCACGTTCAAGGAGTEST: gi|15368028|gb|BI527454.1|BI527454
genomic: TGTGCACGGGCGCCAAGAGCGAGGATGACTCCCGCACGGCCGCGCGTCGTgtaagtacct ... ggtcgtgcagTACGCCAAGATTGTACAGAAGCTGGGCTTCCCTGCCACGTTCAAGGAGT
EST: TGTGCACGGGCGCCAAGAGCGAGGATGACTCCCGCACGGCCGCGCGTCGT TACGCCAAGATTGTACAGAAGCTGGGCTTCCCTGCCACGTTC
genomic: TGTGCACGGGCGCCAAGAGCGAGGATGACTCCCGCACGGCCGCGCGTCGTgtaagtacct ... ggtcgtgcagTACGCCAAGATTGTACAGAAGCTGGGCTTCCCTGCCACGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTGCACGGGCGCCAAGAGCGAGGATGACTCCCGCACGGCCGCGCGTCGTgtaagtacctagatgttgccgccctacctgctgggtgtagcagcggtgcctttgctacactgcgtcactgctctcgggagcgtggagcgggctaatcagg
- - - - - - - - - - GAGGAT
- - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tagatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgccttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgtca