1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AATGAACCCCAACTACACGGAGTTCAAGTTCCCCCAGATCAAGGCGCACCCCTGGACGAAGGTGTTCAGCAAGCGGATGCCGCCGGACGCCGTGGACCTGgtaggtacagcggccatgcagtgcacggcggctcagaagcttggggttgtcttttcaacacactggttgttttcctcctaagcagccatctgccattcttccttccgcag
species | Chlamydomonas reinhardtii |
transcript | EDP05327 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCTGGACGAAGGTGTTCAGCAAGCGGATGCCGCCGGACGCCGTGGACCTG GTGTCCAAGCTGCTGCAGTACGCGCCCCAGAAGCGCATGACCGCGGTGCAGEST: gi|6546838|gb|AV392622.1|AV392622
genomic: CCTGGACGAAGGTGTTCAGCAAGCGGATGCCGCCGGACGCCGTGGACCTGgtaggtacag ... ccttccgcagGTGTCCAAGCTGCTGCAGTACGCGCCCCAGAAGCGCATGACCGCGGTGCAG
EST: CCTGGACGAAGGTGTTCAGCAAGCGGATGCCGCCGGACGCCGTGGACCTG GTGTCCAAGCTGCTGCAGTACGCGCCCCAGAAGCEST: gi|161794837|gb|FC077383.1|FC077383
genomic: CCTGGACGAAGGTGTTCAGCAAGCGGATGCCGCCGGACGCCGTGGACCTGgtaggtacag ... ccttccgcagGTGTCCAAGCTGCTGCAGTACGCGCCCCAGAAGC
EST: CCTGGACGAAGGTGTTCAGCAAGCGCATGCCGCCGGACGCCGTGGACCTG GTGTCCAAGCTGCTGCAGTACGCGCCCCAGAAGCGCATGACCGCGGTGCAGEST: gi|34986544|gb|CF560461.1|CF560461
genomic: CCTGGACGAAGGTGTTCAGCAAGCGGATGCCGCCGGACGCCGTGGACCTGgtaggtacag ... ccttccgcagGTGTCCAAGCTGCTGCAGTACGCGCCCCAGAAGCGCATGACCGCGGTGCAG
EST: CCTGGACGAAGGTGTTCAGCAAGCGGATGCCGCCGGACGCCGTGGACCTG GTGTCCAAGCTGCTGCAGTACGCGCCCCAGAAGCGCATGACCGCGGTGCAGEST: gi|161798027|gb|FC087776.1|FC087776
genomic: CCTGGACGAAGGTGTTCAGCAAGCGGATGCCGCCGGACGCCGTGGACCTGgtaggtacag ... ccttccgcagGTGTCCAAGCTGCTGCAGTACGCGCCCCAGAAGCGCATGACCGCGGTGCAG
EST: CCTGGACGAAGGTGTTCAGCAAGCGCATGCCGCCGGACGCCGTGGACCTG GTGTCCAAGCTGCTGCAGTACGCGCCCCAGAAGCGCATGACCGCGGTGCAG
genomic: CCTGGACGAAGGTGTTCAGCAAGCGGATGCCGCCGGACGCCGTGGACCTGgtaggtacag ... ccttccgcagGTGTCCAAGCTGCTGCAGTACGCGCCCCAGAAGCGCATGACCGCGGTGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGAACCCCAACTACACGGAGTTCAAGTTCCCCCAGATCAAGGCGCACCCCTGGACGAAGGTGTTCAGCAAGCGGATGCCGCCGGACGCCGTGGACCTGgtaggtacagcggccatgcagtgcacggcggctcagaagcttggggttgtcttttcaacacactggttgttttcctcctaagcagccatctgccattcttccttccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG