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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagagctgttgtgcgcgcccggtcccgttcgctgataggtctaacccccgaacccccctccacaactgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04926
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49466252|gb|BP094165.1|BP094165
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|10794354|gb|AV631720.1|AV631720
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|49465037|gb|BP092950.1|BP092950
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAA                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|49469013|gb|BP096874.1|BP096874
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|49467949|gb|BP095810.1|BP095810
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTG
EST: gi|49468728|gb|BP096589.1|BP096589
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTCGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|49469720|gb|BP097581.1|BP097581
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|49469119|gb|BP096980.1|BP096980
EST:     GCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: GCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|10791117|gb|AV628483.1|AV628483
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|10793000|gb|AV630366.1|AV630366
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|49468010|gb|BP095871.1|BP095871
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|49467077|gb|BP094990.1|BP094990
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|10794486|gb|AV631852.1|AV631852
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|10788582|gb|AV626302.1|AV626302
EST:     CCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: CCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|10786480|gb|AV643152.1|AV643152
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTCGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|49470909|gb|BP098770.1|BP098770
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|10786326|gb|AV642998.1|AV642998
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|49469972|gb|BP097833.1|BP097833
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|49469982|gb|BP097843.1|BP097843
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTCTTCCAGAAGCAG
EST: gi|49465126|gb|BP093039.1|BP093039
EST:     TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAG                         AAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTC
genomic: TTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagag ... acaactgcagAAGGAGGCGGCTGAGGTGTTCTTTGGTGTCACAAAGCTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTATTACCAAGCTGCTCTACCTGCTGAACCAGGGCGAGGTGTTCACCAAGgtgcggagagctgttgtgcgcgcccggtcccgttcgctgataggtctaacccccgaacccccctccacaactgcag

- - - - CAAGCT
- - - -  AAGCTG
- - - - - AGCTGC
- - - - -  GCTGCT