1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGTGCAGCGCATTTATTGATCGCGACGGCGACTTCATGGAGGTCATGTGCTGCGACTACGGGTTCAGgtcagttccccgttttcaaccagggtgggcgttatggcgcaacaccctcccgccactccacctggcggccacctccactcagctcggtccgctccgctcgcacggcttcaagtgcctgccaaccaactcgccccccaaattttgcttccttccag
species | Chlamydomonas reinhardtii |
transcript | EDP04078 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GATCGCGACGGCGACTTCATGGAGGTCATGTGCTGCGACTACGGGTTCAG GTCTGGCGCTTCGCGGATGTACCAGCAGGAGAACGACGGGCGGATTCCCAAEST: gi|49467835|gb|BP095696.1|BP095696
genomic: GATCGCGACGGCGACTTCATGGAGGTCATGTGCTGCGACTACGGGTTCAGgtcagttccc ... ttccttccagGTCTGGCGCTTCGCGGATGTACCAGCAGGAGAACGACGGGCGGATTCCCAA
EST: GATCGCGACGGCGACTTCATGGAGGTCATGTGCTGCGACTACGGGTTCAG GTCTGGCGCTTCGCGGATGTACCAGCAGGAGAACGACGGGCGGATTEST: gi|22069210|gb|BQ818869.1|BQ818869
genomic: GATCGCGACGGCGACTTCATGGAGGTCATGTGCTGCGACTACGGGTTCAGgtcagttccc ... ttccttccagGTCTGGCGCTTCGCGGATGTACCAGCAGGAGAACGACGGGCGGATT
EST: GATCGCGACGGCGACTTCATGGAGGTCATGTGCTGCGACTACGGGTTCAG GTCTGGCGCTTCGCGGATGTACCAGCAGGAGAACGACGGGCGGATTCCCAAEST: gi|22070606|gb|BQ819944.1|BQ819944
genomic: GATCGCGACGGCGACTTCATGGAGGTCATGTGCTGCGACTACGGGTTCAGgtcagttccc ... ttccttccagGTCTGGCGCTTCGCGGATGTACCAGCAGGAGAACGACGGGCGGATTCCCAA
EST: GATCGCGACGGCGACTTCATGGAGGTCATGTGCTGCGACTACGGGTTCAG GTCTGGCGCTTCGCGGATGTACCAGCAGGAGAACGACGGGCGGATTCCCAAEST: gi|22064314|gb|BQ815735.1|BQ815735
genomic: GATCGCGACGGCGACTTCATGGAGGTCATGTGCTGCGACTACGGGTTCAGgtcagttccc ... ttccttccagGTCTGGCGCTTCGCGGATGTACCAGCAGGAGAACGACGGGCGGATTCCCAA
EST: GATCGCGACGGCGACTTCATGGAGGTCATGTGCTGCGACTACGGGTTCAG GTCTGGCGCTTCGCGGATGTACCAGCAGGAGAACGACGGGCGGATTCCCAAEST: gi|10787327|gb|AV643999.1|AV643999
genomic: GATCGCGACGGCGACTTCATGGAGGTCATGTGCTGCGACTACGGGTTCAGgtcagttccc ... ttccttccagGTCTGGCGCTTCGCGGATGTACCAGCAGGAGAACGACGGGCGGATTCCCAA
EST: GATCGCGACGGCGACTTCATGGAGGTCATGTGCTGCGACTACGGGTACAG GTCTGGCGCTTCGCGGATGTACCAGCEST: gi|15700901|gb|BI725206.1|BI725206
genomic: GATCGCGACGGCGACTTCATGGAGGTCATGTGCTGCGACTACGGGTTCAGgtcagttccc ... ttccttccagGTCTGGCGCTTCGCGGATGTACCAGC
EST: GATCGCGACGGCGACTTCATGGAGGTCATGTGCTGCGACTACGGGTTCAG GTCTGGCGCTTCGCGGATGTACCAGCAGGAGAACGACGGGCGGATTCCCAAEST: gi|15700902|gb|BI725207.1|BI725207
genomic: GATCGCGACGGCGACTTCATGGAGGTCATGTGCTGCGACTACGGGTTCAGgtcagttccc ... ttccttccagGTCTGGCGCTTCGCGGATGTACCAGCAGGAGAACGACGGGCGGATTCCCAA
EST: GATCGCGACGGCGACTTCATGGAGGTCATGTGCTGCGACTACGGGTTCAG GTCTGGCGCTTCGCGGATGTACCAGCAGGAGAACGACGGGCGGATTCCCAAEST: gi|15700900|gb|BI725205.1|BI725205
genomic: GATCGCGACGGCGACTTCATGGAGGTCATGTGCTGCGACTACGGGTTCAGgtcagttccc ... ttccttccagGTCTGGCGCTTCGCGGATGTACCAGCAGGAGAACGACGGGCGGATTCCCAA
EST: GATCGCGACGGCGACTTCATGGAGGTCATGTGCTGCGACTACGGGTTCAG GTCTGGCGCTTCGCGGATGTACCAGCAGGAGAACGACGGGCGGATTCCCAA
genomic: GATCGCGACGGCGACTTCATGGAGGTCATGTGCTGCGACTACGGGTTCAGgtcagttccc ... ttccttccagGTCTGGCGCTTCGCGGATGTACCAGCAGGAGAACGACGGGCGGATTCCCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGCAGCGCATTTATTGATCGCGACGGCGACTTCATGGAGGTCATGTGCTGCGACTACGGGTTCAGgtcagttccccgttttcaaccagggtgggcgttatggcgcaacaccctcccgccactccacctggcggccacctccactcagctcggtccgctccgctcgcacggcttcaagtgcctgccaaccaactcgccccccaaattttgcttccttccag
- - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - TGCTGC