1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GCGCAGCGTGGTCGTTCAGGCCGCCAAGGAGCTGCACTTCAACCGCAACATGGAGGCGCTGAAGAAGATGCAGgtgcggggccagcgctggcataacaggcaatcgcaacccctcactccctcgttgcacccagacccagcacctcccacccccccctcacacacagccttcctgccgtccttgcccctagcatgctagctcaccactccaaccaaactgcttgttgcttctactgacag
species | Chlamydomonas reinhardtii |
transcript | EDP03982 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCAAGGAGCTGCACTTCAACCGCAACATGGAGGCGCTGAAGAAGATGCAG GCTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGEST: gi|49465644|gb|BP093557.1|BP093557
genomic: CCAAGGAGCTGCACTTCAACCGCAACATGGAGGCGCTGAAGAAGATGCAGgtgcggggcc ... ctactgacagGCTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG
EST: CCAAGGAGCTGCACTTCAACCGCAACATGGAGGCGCTGAAGAAGATGCAG GCTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGEST: gi|10782915|gb|AV639587.1|AV639587
genomic: CCAAGGAGCTGCACTTCAACCGCAACATGGAGGCGCTGAAGAAGATGCAGgtgcggggcc ... ctactgacagGCTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG
EST: CCAAGGAGCTGCACTTCAACCGCAACATGGAGGCGCTGAAGAAGATGCAG GCTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGEST: gi|10786054|gb|AV642726.1|AV642726
genomic: CCAAGGAGCTGCACTTCAACCGCAACATGGAGGCGCTGAAGAAGATGCAGgtgcggggcc ... ctactgacagGCTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG
EST: CCAAGGAGCTGCACTTCAACCGCAACATGGAGGCGCTGAAGAAGATGCAG GCTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGEST: gi|49467062|gb|BP094975.1|BP094975
genomic: CCAAGGAGCTGCACTTCAACCGCAACATGGAGGCGCTGAAGAAGATGCAGgtgcggggcc ... ctactgacagGCTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG
EST: CCAAGGAGCTGCACTTCAACCGCAACATGGAGGCGCTGAAGAAGATGCAG GCTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGEST: gi|6552100|gb|AV397884.1|AV397884
genomic: CCAAGGAGCTGCACTTCAACCGCAACATGGAGGCGCTGAAGAAGATGCAGgtgcggggcc ... ctactgacagGCTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG
EST: CCAAGGAGCTGCACTTCAACCGCAACATGGAGGCGCTGAAGAAGATGCAG GCTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGEST: gi|22051882|gb|BQ809934.1|BQ809934
genomic: CCAAGGAGCTGCACTTCAACCGCAACATGGAGGCGCTGAAGAAGATGCAGgtgcggggcc ... ctactgacagGCTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG
EST: CCAAGGAGCTGCACTTCAACCGCAACATGGAGGCGCTGAAGAAGATGCAG GCTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGEST: gi|6547392|gb|AV393176.1|AV393176
genomic: CCAAGGAGCTGCACTTCAACCGCAACATGGAGGCGCTGAAGAAGATGCAGgtgcggggcc ... ctactgacagGCTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG
EST: CCAAGGAGCTGCACTTCAACCGCAACATGGAGGCGCTGAAGAAGATGCAG GCTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGEST: gi|49465381|gb|BP093294.1|BP093294
genomic: CCAAGGAGCTGCACTTCAACCGCAACATGGAGGCGCTGAAGAAGATGCAGgtgcggggcc ... ctactgacagGCTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG
EST: CCAAGGAGCTGCACTTCAACCGCAACATGGAGGCGCTGAAGAAGATGCAG GCTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGEST: gi|6546630|gb|AV392414.1|AV392414
genomic: CCAAGGAGCTGCACTTCAACCGCAACATGGAGGCGCTGAAGAAGATGCAGgtgcggggcc ... ctactgacagGCTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG
EST: CCAAGGAGCTGCACTTCAACCGCAACATGGAGGCGCTGAAGAAGATGCAG GCTGGTGTGGACAAGCTGGCCACCGGGGTCGGTGTGACCATCGGCCCCAAGEST: gi|49460469|gb|BP088382.1|BP088382
genomic: CCAAGGAGCTGCACTTCAACCGCAACATGGAGGCGCTGAAGAAGATGCAGgtgcggggcc ... ctactgacagGCTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG
EST: CCAAGGAGCTGCACTTCAACCGCAACATGGAGGCGCTGAAGAAGATGCAG GCTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGEST: gi|15702828|gb|BI727133.1|BI727133
genomic: CCAAGGAGCTGCACTTCAACCGCAACATGGAGGCGCTGAAGAAGATGCAGgtgcggggcc ... ctactgacagGCTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG
EST: CCAAGGAGCTGCACTTCAACCGCAACATGGAGGCGCTGAAGAAGATGCAG GCTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG
genomic: CCAAGGAGCTGCACTTCAACCGCAACATGGAGGCGCTGAAGAAGATGCAGgtgcggggcc ... ctactgacagGCTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGCAGCGTGGTCGTTCAGGCCGCCAAGGAGCTGCACTTCAACCGCAACATGGAGGCGCTGAAGAAGATGCAGgtgcggggccagcgctggcataacaggcaatcgcaacccctcactccctcgttgcacccagacccagcacctcccacccccccctcacacacagccttcctgccgtccttgcccctagcatgctagctcaccactccaaccaaactgcttgttgcttctactgacag
- - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG