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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAACTGGGCCAAGGGCCACTACACCGAGGGCGCTGAGCTGATTGACTCCGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagttctgcacgggccgtcgggtgtcagtgtatggaccgcagggctcggcatgacgggctgctttgggctgtgcgccccttcgtcttcacacgttgctgacttctctctcccctgttcttccctaccctcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP02933
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP02933 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: PP1S22_396V6.1 (Physcomitrella patens), 5'ss of exon 1
AACAACTGGGCCAAGGGCCACTACACCGAGGGCGCTGAGCTGATTGACTCCGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgt--gagcagttctgcacgggccgtcgggtgtcagtgtatggaccgcagggctcggcatgacgggctgctttgggctgtgcgccccttcgtcttcacacgttgctgacttctctctcccctgttcttccctaccctcag
|| || ||||| || || |||||||| ||||| |||||||| ||||| || ||||||||||| ||  | |||||||| ||||||||||| ||| |||| |||  || ||  ||   ||||    |    | |   | |   |||    |    |    ||||   |||  ||    | | |   | | | | ||      ||                                     
AATAATTGGGCTAAAGGTCACTACACAGAGGGAGCTGAGCTTATTGATTCTGTGCTGGACGTTGTTAGGAAGGAGGCGGAGAGCTGCGATTGCTTGCAAGgtatgatcaaatccaaacgg---tttccatctttctttgaagactattgaaa-cactttgactatctgtctttttgtctccaatcgtgcctttttttgtattat-----------------------------------

upper sequence: EDP02933 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: PP1S93_158V6.1 (Physcomitrella patens), 5'ss of exon 1
AACAACTGGGCCAAGGGCCACTACACCGAGGGCGCTGAGCTGATTGACTCCGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagttctgcacgggccgtcgggtgtcagtgtatggaccgcagggctcggcatgacgggctgctttg-ggctgtgcgccccttcgtcttcaca---cgttgctgacttctctctcccctgtt---cttccctaccctcag-----------------------
||||||||||| ||||| || ||||| ||||| |||||||||||||| |||||  | || || || || |||||||||||||||||||||||| |||| |||     | |      ||||  |  | ||  | |   || |  ||  ||   ||  ||   || |||| || || ||        ||    |  ||    || | | || ||    |   | | ||     | | |   || ||                       
AACAACTGGGCTAAGGGGCATTACACGGAGGGAGCTGAGCTGATTGATTCCGTATTAGATGTGGTGCGGAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgta--tggctggattagggcgatttgttgataatcggtg-attgcgaggtgagggttgtgtggatgctgtgagggtgaaaatagtttttcatggacgtggcgatacggaattgcgacaagcgtattgggtgtgcatgtgctgaggggttgtgagtgtggttttgcag

upper sequence: EDP02933 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: PP1S85_170V6.1 (Physcomitrella patens), 5'ss of exon 1
AACAACTGGGCCAAGGGCCACTACACCGAGGGCGCTGAGCTGATTGACTCCGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagttc-----tgcacgggccgtcgg-gtgtcagtgtatggaccgcagggctcggcatgacgggctgctttgggctgtgcgccccttcgtcttcacacgttgctgacttctctctcccctgttcttccctaccctcag---------------------------
||||||||||| ||||| |||||||| ||||| |||||| |||| || || ||  ||||||| || ||||||||||  |||||||||||||||||||| |||  ||   ||     ||   ||   || |  || | ||||| |||  | |    | ||  | |  |   ||  |||| |      |  | | |    ||   | ||| |     | |    || | | ||  |    |   |                           
AACAACTGGGCTAAGGGACACTACACGGAGGGAGCTGAGTTGATCGATTCTGTTTTGGACGTGGTGCGCAAGGAGGTGGAGAGCTGCGACTGCCTGCAAGgtatgcccgtcgttgttgtgtggttggtggacgtatgagtgtgtggttc-cttatcccgtgagggtgtaatggcttggtcccatgactgcgttgca--cagctggtgcggcgagatgtgaggccgggttttgacagggcagggtgggttacacgattgcgcgatgtgcag

upper sequence: EDP02933 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: PP1S252_101V6.1 (Physcomitrella patens), 5'ss of exon 1
AACAACTGGGCCAAGGGCCACTACACCGAGGGCGCTGAGCTGATTGACTCCGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCA------GGgtgagcagttctgcacgggccgtcgggtgtcagtgtatggaccgcagggctcggcatgacgggctgctttgggctgtgcgccccttcgtcttcacacgttgctgacttctctctcccctgttcttccctaccctcag---------
||||||||||| ||||| || ||||| ||||| || ||| |||| ||||| ||| |||| || || || |||||||||||||||||||||||| ||||      |||||      | ||   | |  |  ||  |   |   |||| | |  |||   ||   |  |||   |   | | |     | | |   |    |     || |   || | |     ||| |           |  |         
AACAACTGGGCGAAGGGGCATTACACGGAGGGAGCGGAGTTGATCGACTCGGTGTTGGATGTGGTGCGGAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtacgggtggattagtgtgtcggcgttgatggaggaggggagatgggcagt-gggtgaggttgggagggaaacggcgag-tagaaacgcatagatgggaagggtgtgtttgtttgtgtgggtgctgatgcggtgggggatgtgggtgtgcag

upper sequence: EDP02933 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: PP1S35_125V6.1 (Physcomitrella patens), 5'ss of exon 2
AACAACTGGGCCAAGGGCCACTACACCGAGGGCGCTGAGCTGATTGACTCCGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagttctgcacgggccgtcgggtgtcagtgtatggaccgcagggctcggcatgacgggctgctttgggctgtgcgccccttcgtcttcacacgttgctgacttctctctcccctgttcttccctaccctcag
|| |||||||| |||||||| |||||||| |||||||| |||||||| ||||| || || || || || |||||||| ||||| ||||||||||| || |||    | |    |||||  |        |||         ||      ||  |     | ||   | |||  |      ||  |  ||   || | ||||| | ||  |                           
AATAACTGGGCAAAGGGCCATTACACCGACGGCGCTGAACTGATTGATTCCGTACTCGATGTTGTTCGTAAGGAGGCAGAGAGTTGCGACTGCCTCCAAGgtacaaaat----cacggcactcatttcatcacccccccccccttcaatcttagggcttccggtaaccttgcccca---accgatgggt---cataagttgcaggctcat---------------------------

upper sequence: EDP02933 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: PP1S93_136V6.1 (Physcomitrella patens), 5'ss of exon 1
AACAACTGGGCCAAGGGCCACTACACCGAGGGCGCTGAGCTGATTGACTCCGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtg-agcagttctgcacgggccgtcgggtgtcagtgtatggac-cgcagggctcggcatgacgggctgctttgggctgtgcgcccct--tcgtcttcacacgttgctgacttctctctcccc-tgttcttccctaccctcag--------------------------------------
||||||||||||||||| || ||||| ||||| |||||||||||||| |||||| |||| || || || |||||||||||||||||||||||| |||| |||   || |   ||        ||   || | |   || ||    || ||     | || ||  | | || ||| |  |||| |     ||||  |       |    |  | | | |     | |   |   || |    |                                      
AACAACTGGGCCAAGGGGCATTACACGGAGGGAGCTGAGCTGATTGATTCCGTGTTGGATGTGGTGCGAAAGGAGGCTGAGAGCTGCGACTGCTTGCAAGgtatggctggattggggaactggttaagtttgaagatacgggggtgcgggttgttgtattacttgtttctatggccgttgcgacgtggatcgtgataggggaatttatatatatatatatatatatatatatatatcgaaggtttacatgagctgaggttgtgggtgtgttatttggcag

upper sequence: EDP02933 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: PP1S218_7V6.1 (Physcomitrella patens), 5'ss of exon 1
AACAACTGGGCCAAGGGCCACTACACCGAGGGCGCTGAGCTGATTGACTCCGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagttctgcacgggccgtcgg-gtgtcagtgtatggaccgcagggctcggcatgacgggctgctttgggctgtgcgccccttcgt-cttcacacgttgctgacttctctctcccctgttcttccctaccctcag
||||||||||| ||||| || ||||||||||| |||||| |||||||||| || ||||| || || || |||||||||||||||||||||||  |||| |||  | | |   |   |  || || | |  ||| ||| |   |        ||    |  |  | ||  |         |  |   | |  |    |  ||| |    |  |   |   || | | |   |   |    
AACAACTGGGCGAAGGGACATTACACCGAGGGAGCTGAGTTGATTGACTCTGTTCTGGATGTGGTGCGGAAGGAGGCTGAGAGCTGCGACTGTTTGCAAGgtttgtaatctcgt--gatccatctgtggatcactgtgttttct----tattcacattttcttggtgaatattatcacacatcttcttgcacgatgcttgttacgagatggttaataatctatgcgtgattgtgcag--

upper sequence: EDP02933 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: PP1S252_90V6.1 (Physcomitrella patens), 5'ss of exon 1
AACAACTGGGCCAAGGGCCACTACACCGAGGGCGCTGAGCTGATTGACTCCGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagttctgcacgggccgtcgggtgtcagtgtatggaccgcagggctcggcatgacgggctgctttgggctgtgcgccccttcgtcttcacacgttgctgacttctctctcccctgttcttccctaccctcag---------------------------------------------------------
||||||||||| || || || ||||| ||||| |||||| | || |||||||| ||||||||||| ||||||||||| || ||||| ||||||||||| |||  ||| |        | | ||  |  |  || |    |    |   ||  ||  ||| ||  |  | |  ||  |||||| | || |      ||  |||||      | |   | |||  |     ||    |                                                          
AACAACTGGGCGAAAGGGCATTACACTGAGGGAGCTGAGTTAATCGACTCCGTTCTGGACGTCGTGCGCAAGGAGGCCGAAAGCTGTGACTGCCTGCAAGgtatgcattgacatctcgtcggtttgtgg--agcgctctgtgtactctgcctggt-tgatggttttgtcttagcgatgcgccgcctccttgggggacagtgctgtggatccccggtcttgtcgtctatgacgactacgttctagcaaaattgtccataaaatcgagtgctgaccttctctctctgtaacctcag

upper sequence: EDP02933 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: EFJ34212 (Selaginella moellendorffii), 5'ss of exon 1
AACAACTGGGCCAAGGGCCACTACACCGAGGGCGCTGAGCTGATTGACTCCGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgag-cagttctgcacgggc-cgtcgggtgtcagtgtatggaccgcagggctcggcatgacgggctgctttgggctgtgcgccccttcgtcttcacacgttgctgacttctctctcccctgttcttccctaccctcag
|| |||||||||||||| ||||||||||| || || ||||| || || |||||||| || || ||  | || || || ||||| ||||| || || || |||  | |  || ||| |     || || |  |   | | | |  |      || ||  | |  || |  |            ||  ||   |||   | | |  |                                  
AATAACTGGGCCAAGGGACACTACACCGAAGGGGCCGAGCTCATCGATTCCGTGCTCGATGTTGTGAGGAAAGAAGCCGAGAGTTGCGATTGTCTCCAAGgtatgtctcttttgctcttcttcgacgagcattttttttttgttctttccacttggt-taatcggttcttccaaa----aaaccatttttccttagaatggtttt----------------------------------

upper sequence: EDP02933 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: EFJ07091 (Selaginella moellendorffii), 5'ss of exon 1
---------AACAACTGGGCCAAGGGCCACTACACCGAGGGCGCTGAGCTGATTGACTCCGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagttctgcacgggccgtcgggtgtcagtgtatggaccgcagggctcggcatgacgggctgctttgggctgtgcgccccttcgtcttcacacgttgctgacttctctctcccctgttcttccctaccctcag
         ||||||||||||||||| |||||||| |||||||| ||  |||||||||| |||||||| || ||  | |||||||| ||| | ||||| || || || ||  |  ||  |   ||     |||     |  | | ||     ||    ||| |  ||   |   | ||  |                                                                 
GGAGCTGGTAACAACTGGGCCAAGGGACACTACACGGAGGGCGCCGAATTGATTGACTCGGTGCTGGATGTTGTGAGGAAGGAGGCCGAGGGATGCGATTgtctccaaggcaa--agcacaaaacccatggtcaaactt--gcggattctttgcttaactctg--tgcttg--cgtttcag-----------------------------------------------------------------

upper sequence: EDP02933 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: EFJ36017 (Selaginella moellendorffii), 5'ss of exon 1
AACAACTGGGCCAAGGGCCACTACACCGAGGGCGCTGAGCTGATTGACTCCGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagttctgcacgggccgtcgggtgtcagtgtatggaccgcagggctcggcatgacgggctgctttgggctgtgcgccccttcgtcttcacacgttgctgacttctctctcccctgttcttccctaccctcag
||||||||||||||||| |||||||| |||||||| ||||| || ||||||||||| || || ||  | ||||| || ||||||||||||||||| || |||  |  ||     |  |    | |||| |   |             ||||   |  || |   || | | ||| |                                                             
AACAACTGGGCCAAGGGTCACTACACAGAGGGCGCCGAGCTCATAGACTCCGTGCTCGATGTGGTGAGAAAGGAAGCCGAGAGCTGCGACTGCCTCCAAGgtatgtggtcg---atcgattcttgggtcttctttagcattgtttgtggct-aactggaggatgtgttcttggcag-------------------------------------------------------------

upper sequence: EDP02933 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: EFJ06142 (Selaginella moellendorffii), 5'ss of exon 1
AACAACTGGGCCAAGGGCCACTACACCGAGGGCGCTGAGCTGATTGACTCCGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagttctgcacgggccgtcgggtgtcagtgtatggaccgcagggctcggcatgacgggctgctttgggctgtgcgccccttcgtcttcacacgttgctgacttctctctcccctgttcttccctaccctcag
||||||||||||||||| |||||||| |||||||| ||||| || ||||||||||| || || ||  | ||||| || ||||||||||| ||||| || |||  |  ||     |  |    | |||| |   |             ||||   |  || |   || | | ||| |                                                             
AACAACTGGGCCAAGGGTCACTACACAGAGGGCGCCGAGCTCATCGACTCCGTGCTCGATGTGGTGAGAAAGGAAGCCGAGAGCTGCGATTGCCTCCAAGgtatgtggtcg---atcgattattgggtcttctttagcattgtttgtggct-aactggaggatgtgttcttggcag-------------------------------------------------------------

upper sequence: EDP02933 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: EFJ29447 (Selaginella moellendorffii), 5'ss of exon 1
---------AACAACTGGGCCAAGGGCCACTACACCGAGGGCGCTGAGCTGATTGACTCCGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagttctgcacgggccgtcgggtgtcagtgtatggaccgcagggctcggcatgacgggctgctttgggctgtgcgccccttcgtcttcacacgttgctgacttctctctcccctgttcttccctaccctcag
         ||||||||||||||||| |||||||| |||||||| ||  |||| ||||| ||||||||||| ||  | |||||||| ||| | ||||| || || || ||     | | | |||    ||     |    |   | |  |   |   ||| |  ||    |  ||||||   ||||| |||                                                       
GGAGCTGGTAACAACTGGGCCAAGGGACACTACACGGAGGGCGCGGAATTGATCGACTCAGTGCTGGACGTTGTGAGGAAGGAGGCCGAGGGATGCGATTgtctccaaggca---aatcccgcaaaacccac---gatcaaacttgtcaagttcttcgcttga-atctgtgcttgctttttcctgtgtgccag-----------------------------------------------------

upper sequence: EDP02933 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: EFJ29566 (Selaginella moellendorffii), 5'ss of exon 1
AACAACTGGGCCAAGGGCCACTACACCGAGGGCGCTGAGCTGATTGACTCCGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagttctgcacgggccgtcgggtgtcagtgtatggaccgcagggctcggcatgacgggctgctttgggctgtgcgccccttcgtcttcacacgttgctgacttctctctcccctgttcttccctaccctcag
||||||||||| ||||| |||||||| || || || ||||| || ||||| || || ||||||||||| ||||| || |||||||| || ||| |||| ||| || ||   |          | |  |||   |  | |  |  |     ||    |||   |                                                                          
AACAACTGGGCGAAGGGTCACTACACAGAAGGAGCCGAGCTTATCGACTCAGTTCTTGACGTCGTCCGAAAGGAAGCCGAGAGCTGTGATTGCTTGCAAGgtaaggagaaatctgaattatatagtttgttc-ttcacgttcttct---ttctttctgaacag--------------------------------------------------------------------------

upper sequence: EDP02933 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: EFJ05935 (Selaginella moellendorffii), 5'ss of exon 1
---------AACAACTGGGCCAAGGGCCACTACACCGAGGGCGCTGAGCTGATTGACTCCGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagttctgcacgggccgtcgggtgtcagtgtatggaccgcagggctcggcatgacgggctgctttgggctgtgcgccccttcgtcttcacacgttgctgacttctctctcccctgttcttccctaccctcag
         ||||||||||||||||| |||||||| |||||||| ||  |||| ||||| ||| |||| || ||  | |||||||| ||| | ||||| || || || ||  |  ||  |   ||      ||     |  | | ||     ||    |||    ||   |   | ||  |                                                                 
GGAGCTGGTAACAACTGGGCCAAGGGACACTACACGGAGGGCGCCGAATTGATCGACTCGGTGTTGGATGTTGTGAGGAAGGAGGCCGAGGGATGCGATTgtctccaaggcaa--agcacaaaacccatgatcaaactt--gcggattctttgcttaactct-tgtgcttg--cgtttcag-----------------------------------------------------------------

upper sequence: EDP02933 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: EFJ35740 (Selaginella moellendorffii), 5'ss of exon 1
AACAACTGGGCCAAGGGCCACTACACCGAGGGCGCTGAGCTGATTGACTCCGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagttctgcacgggccgtcgggtgtcagtgtatggaccgcagggctcggcatgacgggctgctttgggctgtgcgccccttcgtcttcacacgttgctgacttctctctcccctgttcttccctaccctcag
|||||||||||||| || || || || || || || ||| |||| ||  | || || ||||| || |||||||||||||||| ||||||||||||||| ||| |          | |  |    |     ||   | || | |  |          |       |  |||  | || ||                                                          
AACAACTGGGCCAAAGGTCATTATACAGAAGGTGCCGAGTTGATCGATGCTGTTCTCGACGTTGTTCGCAAGGAGGCTGAGAACTGCGACTGCCTGCAAGgtaaa---------atgaac----gaaaaccacactttgaagcaaaaaagatttttttttttttttttttttgttgagcag--------------------------------------------------------

upper sequence: EDP02933 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: EFJ38610 (Selaginella moellendorffii), 5'ss of exon 1
AACAACTGGGCCAAGGGCCACTACACCGAGGGCGCTGAGCTGATTGACTCCGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagttctgcacgggccgtcgggtgtcagtgtatggaccgcagggctcggcatgacgggctgctttgggctgtgcgccccttcgtcttcacacgttgctgacttctctctcccctgttcttccctaccctcag
||||| ||||||||||| ||||||||||| || || ||||| ||||| || || || |||||||| || |||||||| ||||| || |||||  |||| ||| |       |  | || |  |   ||||  || |             ||  || | |     | ||||    | | |     ||  ||||| ||                                         
AACAATTGGGCCAAGGGTCACTACACCGAAGGGGCCGAGCTTATTGATTCGGTTCTCGACGTCGTTCGAAAGGAGGCCGAGAGTTGTGACTGTTTGCAAGgtaa-----cgtagatggtcaat--agtgttggttt-------------cttagcgttaa----ttctttttttttttcctttgtttttcttctcag----------------------------------------

upper sequence: EDP02933 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: EFJ21830 (Selaginella moellendorffii), 5'ss of exon 1
AACAACTGGGCCAAGGGCCACTACACCGAGGGCGCTGAGCTGATTGACTCCGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagttctgcacgggccgtcgggtgtcagtgtatggaccgcagggctcggcatgacgggctgctttgggctgtgcgccccttcgtcttcacacgttgctgacttctctctcccctgttcttccctaccctcag
|| |||||||||||||| ||||||||||| || || ||||| || || |||||||| || || ||  | || || || ||||| ||||| || || || |||  |   |  |   |    | |||  | |     | | |  |      || ||         ||| | |   |       || ||  || | | |      ||  || |||                         
AATAACTGGGCCAAGGGACACTACACCGAAGGGGCCGAGCTCATCGATTCCGTGCTCGATGTTGTGAGGAAAGAAGCCGAGAGTTGCGATTGTCTCCAAGgtatgtc-tcttttgctcttcctcgattttt----ttttgttctttccacttggt----taatctgttctt--ccaaaaaaccatttttccttagaa-----tggtttttctactt---------------------

upper sequence: EDP02933 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: EFJ31535 (Selaginella moellendorffii), 5'ss of exon 1
AACAACTGGGCCAAGGGCCACTACACCGAGGGCGCTGAGCTGATTGACTCCGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtga-gcagttctgcacgggccgtcgggtgtcagtgtatggaccgcagggctcggcatgacgggctgctttgggctgtgcgccccttcgtcttcacacgttgctgacttctctctcccctgttcttccctaccctcag
||||| ||||||||||| ||||||||||| || || ||||| ||||| || || || |||||||| || |||||||| ||||| || |||||  |||| ||| | | || |   ||   |   | |  | | || ||     |        |     ||     || ||  |                                                                  
AACAATTGGGCCAAGGGTCACTACACCGAAGGGGCCGAGCTTATTGATTCGGTTCTCGACGTCGTTCGAAAGGAGGCCGAGAGTTGTGACTGTTTGCAAGgtaacgtagatggtcaatagtgttggtttcttagcgttaattcttttttttttcctttgtttttcttctcag------------------------------------------------------------------

upper sequence: EDP02933 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: EFJ38783 (Selaginella moellendorffii), 5'ss of exon 1
AACAACTGGGCCAAGGGCCACTACACCGAGGGCGCTGAGCTGATTGACTCCGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagt--tctgcacgg-gccgtcgggtgtcagtgtatggaccgcagggctcggcatgacgggctgctttgggctgtgcgccccttcgtcttcacacgttgctgacttctctctcccctgttcttccctaccctcag
||||||||||| ||||| |||||||| || || || ||||| || ||||| || || ||||||||||| ||||| || |||||||| || ||| |||| ||| || ||   |||| |  |    ||  | | |    || |   |       ||   ||                                                                                 
AACAACTGGGCGAAGGGTCACTACACAGAAGGAGCCGAGCTTATCGACTCAGTTCTTGACGTCGTCCGAAAGGAAGCCGAGAGCTGTGATTGCTTGCAAGgtaaggagaaatctgaattgtatagtttgttcttcacgt-tcttctttctttctaaacag--------------------------------------------------------------------------------

upper sequence: EDP02933 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: EFJ28017 (Selaginella moellendorffii), 5'ss of exon 1
---------AACAACTGGGCCAAGGGCCACTACACCGAGGGCGCTGAGCTGATTGACTCCGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagttctgcacgggccgtcgggtgtcagtgtatggaccgcagggctcggcatgacgggctgctttgggctgtgcgccccttcgtcttcacacgttgctgacttctctctcccctgttcttccctaccctcag
         ||||||||||||||||| |||||||| |||||||| ||  | || ||||| ||||||||||| ||  | |||||||| ||| | ||||| || || || ||  |      |   ||      ||     |       |    |||  |  || |  ||   |  ||||||   ||||| |||                                                       
GGAGCTGGTAACAACTGGGCCAAGGGACACTACACGGAGGGCGCGGAATTAATCGACTCGGTGCTGGACGTTGTGAGGAAGGAGGCCGAGGGATGCGATTgtctccaaggcaaatcccgcaaaacccatgatcaaac-ttgtcaagttcttcgcttgaatctg--tgcttgcttgctttttcctgtgtgccag-----------------------------------------------------

upper sequence: EDP02933 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: EFJ10691 (Selaginella moellendorffii), 5'ss of exon 1
AACAACTGGGCCAAGGGCCACTACACCGAGGGCGCTGAGCTGATTGACTCCGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagttctgcacgggccgtcgggtgtcagtgtatggaccgcagggctcggcatgacgggctgctttgggctgtgcgccccttcgtcttcacacgttgctgacttctctctcccctgttcttccctaccctcag
|||||||||||||| || || || || || || || ||| |||| ||  | || || || || || |||||||||||||||| ||||||||||||||| ||| |       || |||      |     |    | |   |    ||   |     |       |   ||| || |                                                             
AACAACTGGGCCAAAGGTCATTATACAGAAGGTGCCGAGTTGATCGATGCTGTTCTCGATGTTGTTCGCAAGGAGGCTGAGAACTGCGACTGCCTGCAAGgtaaa-----atgaacgaaa-accacactttgaagcaaaaa----agaattttttttttttttttttgttgagcag-------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7427169|gb|AW661337.1|AW661337
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|22076661|gb|BQ825437.1|BQ825437
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCAACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|161796811|gb|FC084545.1|FC084545
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|161791310|gb|FC081209.1|FC081209
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|22065415|gb|BQ816345.1|BQ816345
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|161815722|gb|FC103176.1|FC103176
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|10772522|gb|AV623345.1|AV623345
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCT
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCT
EST: gi|161819488|gb|FC108303.1|FC108303
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|161811646|gb|FC096356.1|FC096356
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|161821894|gb|FC105951.1|FC105951
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|161793071|gb|FC079517.1|FC079517
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|161795755|gb|FC087596.1|FC087596
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|161816007|gb|FC103754.1|FC103754
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|10788441|gb|AV626161.1|AV626161
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCT
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCT
EST: gi|7686832|gb|AW757480.1|AW757480
EST:     CGTGCTGGACGACGACCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|14227672|gb|BG846488.1|BG846488
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|161797497|gb|FC086310.1|FC086310
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|161822885|gb|FC110576.1|FC110576
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|161796150|gb|FC082583.1|FC082583
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|7616238|gb|AW721678.1|AW721678
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|10127992|gb|BE726808.1|BE726808
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|7426730|gb|AW660903.1|AW660903
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|22071815|gb|BQ821153.1|BQ821153
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|6547784|gb|AV393568.1|AV393568
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGNCTGCAGG                         GCTTCCAGGTCTG
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTG
EST: gi|22071818|gb|BQ821156.1|BQ821156
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|161794406|gb|FC080748.1|FC080748
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|22048858|gb|BQ808418.1|BQ808418
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTTCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|161808428|gb|FC096720.1|FC096720
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|6547295|gb|AV393079.1|AV393079
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|23366060|gb|BU653880.1|BU653880
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGT
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGT
EST: gi|22059229|gb|BQ813327.1|BQ813327
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCT
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCT
EST: gi|161817874|gb|FC103569.1|FC103569
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|22049112|gb|BQ808569.1|BQ808569
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTTCAGGTCTGCCACTCTCTGGGT
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGT
EST: gi|161802399|gb|FC092964.1|FC092964
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|161809155|gb|FC095185.1|FC095185
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|161821386|gb|FC107354.1|FC107354
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|49464133|gb|BP092046.1|BP092046
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGGCTGCAGG                         GCTTCCAGGTCTG
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTG
EST: gi|161807536|gb|FC098116.1|FC098116
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|22071914|gb|BQ821252.1|BQ821252
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGTGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|7413214|gb|AW651968.1|AW651968
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|161821539|gb|FC109834.1|FC109834
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|161795179|gb|FC081378.1|FC081378
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|161813403|gb|FC102560.1|FC102560
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
EST: gi|10128008|gb|BE726584.1|BE726584
EST:     CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGG                         GCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA
genomic: CGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagtt ... ctaccctcagGCTTCCAGGTCTGCCACTCTCTGGGTGGCGGCACCGGCTCCGGCATGGGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACAACTGGGCCAAGGGCCACTACACCGAGGGCGCTGAGCTGATTGACTCCGTGCTGGACGTCGTCCGCAAGGAGGCTGAGAGCTGCGACTGCCTGCAGGgtgagcagttctgcacgggccgtcgggtgtcagtgtatggaccgcagggctcggcatgacgggctgctttgggctgtgcgccccttcgtcttcacacgttgctgacttctctctcccctgttcttccctaccctcag

- - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG