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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgctacctaggttcaaggaggggtgctgggaagagggggaatgcggctggggcggccgccggggagcc...

Basic information

species Chlamydomonas reinhardtii
transcript EDP02415
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: LOC_Os03g06630.1 (Oryza sativa), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaag---gttgc-agcaccaagcttgctacctaggttcaaggaggggtgctgggaagagggggaatgcggct----ggggcggccgccggggagcc-
|||| | || ||| | || |  |  || ||    | ||| || ||      ||||||||||||||||||||||||||| || ||||||||||||||||| || |||||||   |      |||| | ||| |   ||| | |||  | |        | || ||||||   | |   |  |  |    |    ||  |  |  |  |  
CTTCGTCGTCTGGGACCCCCACGTCTTCGCCGCCGTCTTCCTCCCACGCTTCTTCAAGCACAACAATTTCTCCAGCTTCGTCCGCCAGCTCAACACCTACgtgagtccccccaatttccattgccaccactagtgttgttccct--gcttgtcttcagttgttgggaaattgtgtgttctgttttcttgttttggatgttgttgttcag

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: LOC_Os03g06630.2 (Oryza sativa), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaa---ggttgc-agcaccaagcttgctacctaggttcaaggaggggtgctgggaagagggggaatgcggctggggcggccgccggggagcc
|||| | || ||| | || |  |  || ||    | ||| || ||      ||||||||||||||||||||||||||| || ||||||||||||||||| || |||||||   |      |||| | ||| |   ||| | |||  | |        | || |||||| |  | |  | | | |     |        |  |  
CTTCGTCGTCTGGGACCCCCACGTCTTCGCCGCCGTCTTCCTCCCACGCTTCTTCAAGCACAACAATTTCTCCAGCTTCGTCCGCCAGCTCAACACCTACgtgagtccccccaatttccattgccaccactagtgttgttccct--gcttgtcttcagttgttgggaa-attgtgtgttctgttttcttgttttggatgttgt-

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: LOC_Os03g53340.1 (Oryza sativa), 5'ss of exon 3
CTTCATTGTATGGAA-GCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgctacctaggttcaag-gaggggtgctgggaagagggggaatgcggctggggcggccgccggggagcc
|||| | || ||| | ||||  |   |   ||| |  ||  || ||     |||||||||||| ||| ||||||||||| || ||||||||||||||||| ||||||||    ||| |  | |   | | ||  | | | |   ||   | ||    ||  |||      |    |       |                  
CTTCGTCGTCTGGGACGCCAATGCGTTCGCCGCCGTGCTC-CTCCCGCGCTACTTCAAGCACAGCAACTTCTCCAGCTTCGTCCGCCAGCTCAACACCTACgtaagtccat--caatggcggaatgcgatgcgcggttcgtgttttggcgtgatcaatggcggggttcttgattttcttttcag------------------

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: LOC_Os03g53340.4 (Oryza sativa), 5'ss of exon 1
CTTCATTGTATGGAA-GCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgctacctaggttcaaggaggggtgctgggaagagggggaatgcggctggggcggccgccggggagcc
|||| | || ||| | ||||  |   |   ||| |  ||  || ||     |||||||||||| ||| ||||||||||| || ||||||||||||||||| ||||||||    ||| |  | |   | | ||  | | | |  |||   |   |     |||   |       ||     |     ||   | |       
CTTCGTCGTCTGGGACGCCAATGCGTTCGCCGCCGTGCTC-CTCCCGCGCTACTTCAAGCACAGCAACTTCTCCAGCTTCGTCCGCCAGCTCAACACCTACgtaagtccat--caatggcggaatgcgatgcgcggttcgt--gttttggcgtgatcaatggcggggttcttgattttcttttcaggggttcag-------

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: LOC_Os03g58160.1 (Oryza sativa), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgctacctag---gttcaaggaggggtgctgggaagagggggaatgcggctggggcggccgccggggagcc
|||| | || ||| | || |     |||| |   |   |||| || |   |||||||||||||||| ||||||||||| || || |||||||| ||||||||||||| || ||  | |  || |  |   | |   ||| |      || | |       |||    |   |  |        | |  ||  |  |   |   
CTTCGTGGTGTGGGATCCTCACCTCTTTGGGAACGTGCTGCTGCCGAGGTACTTCAAGCACAACAACTTCTCCAGCTTCGTCCGGCAGCTCAATACCTATgtaagtcacctgctcgat--catctgcttacatagaacccaatcaaatctatgctaaaccctgatgtgttagaaataatcagggagttggtagtagtttaag-

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: LOC_Os07g08140.1 (Oryza sativa), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgctacctaggttcaaggaggggtgctgggaagagggggaatgcggctggggcggccgccggggagcc
|||| | || ||| | || |  |  || ||    | |||||| ||||    ||||||||||||||| ||||||||||| ||  | |||||||||||||||||||| ||   || |     |    ||   |   |||  |    ||  | |  |    ||     |    |  |  |     |  |     | |  ||| 
CTTCGTGGTGTGGGATCCCCACGCCTTCGCCACCGTCTTGCTCCCCAGGTTCTTCAAGCACAACAACTTCTCCAGCTTCGTCAGGCAGCTCAACACCTATgtaagcccatagccacagctccctccccctccctctatattttgtcctgcaatgcacttgtttgcaacctggttcagttcttgatgtttcgccgctagcg

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: LOC_Os03g12370.3 (Oryza sativa), 5'ss of exon 1
---CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgctacctaggttcaag--gaggggtgctgggaagagggggaatgcggctggggcggccgccggggagcc-
   |||| |  | ||| |  | |  |  || | ||| |||   || | ||  ||||||||||||| ||||||| |||||||  | |||||||||||||||||||| ||   ||  |  | |  | |      | ||| | |  | |  | |     | |    |   |   ||  | | |     ||    |    | | |   | 
CAGCTTCGTGATCTGGGACTCGCACGCCTTCGAGCGCGAC---CTCCACAGGCACTTCAAGCACAGCAATTTCACCAGCTTCATACGCCAGCTCAACACCTATgtgagattcc--cttgatccctgtgttc-gtttgtttctgatgcgcgaattcggtgccatttccagttggttggacgaaatcggtagtgaaatctgagtttct

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: LOC_Os10g28340.2 (Oryza sativa), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgctacctaggttcaaggagg-ggtgctgggaagagggggaatgcggctggggcggccgccggggagcc---------
|||| | || ||| | || |  |  || ||      | | || ||    | ||||||||||||||| ||||||||||| || || |||||||||||||| || ||  |||           |   | || | |  | |||    |   ||||   || || |          |||     |    | |   ||||  |            
CTTCGTCGTCTGGGACCCGCACGTCTTCGCCGACCTCCTCCTCCCGCGCCTCTTCAAGCACAACAACTTCTCCAGCTTCGTCCGGCAGCTCAACACCTACgtgagcacccc---------taatcctaatcctaatccctttccttgtggagatagtactagctgttcttttaattttattcctcctga-accggaaaaaaatacctgtc

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: GRMZM2G125969_T01 (Zea mays), 5'ss of exon 2
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgctacctaggttcaaggaggggtgctgggaagagggggaatgcggct---ggggcggccgccggggagcc
|||| | || ||| | || |  |  || ||   ||   |||| ||||  ||||||||||||||||| ||||||||||| || || |||||||||||||||||||||    |          |      ||| ||  |       | | |  | |||| |   | |   |    | | |||           | | |  ||   
CTTCGTGGTGTGGGATCCGCACGCCTTCGCCACGGTGCTGCTGCCCAGGCACTTCAAGCACAACAACTTCTCCAGCTTCGTCCGGCAGCTCAACACCTATgtaagtgtttgtttgcccattacagttcagcatggaatggttcatgatgctgaggtgttaacagggttgaatgttcagctcccaaacacaacactgttga---

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: GRMZM2G010871_T05 (Zea mays), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgctacctaggttcaaggaggggtgctgggaagagggggaatgcggctgg-ggcggccgccggggagcc----
|||||| || ||| | || |  |  || ||    |   |||| ||    | |||||||||||  || ||||||||||| ||||||||||||||||||||||| ||||   |||||      | | ||   |||  | | |   ||  |                |   |||  |||   |||       ||   ||  ||     
CTTCATCGTCTGGGACCCGCACGTCTTCGCCGACGGGCTGCTCCCGCGCCTCTTCAAGCACAGTAACTTCTCCAGCTTCGTGCGCCAGCTCAACACCTATgtgagtc---ggcaaaacccaaaccccc--cttcttcctttcctttgaaataatccttctcttggtcagggcttgctaatggtaatttgcgtttggttgcaattg

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: GRMZM2G132971_T02 (Zea mays), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgctacctaggttcaag--gaggggtgctgggaag-----agggggaatgcggctggggcggccgccggggagcc---------------------------------------------
|||  | || ||| | || |     |||| |  ||   |||| || |   |||||||||||||||| |||||||||||||| || |||||||| || |||||||||      |    | |  ||       |      ||| | |   |  |||| ||||||  |       |       || ||   |     | |   || |                                                
CTTTGTAGTTTGGGATCCTCATATCTTTGGGACGGTGCTGCTGCCAAGGTACTTCAAGCACAACAACTTCTCCAGCTTTGTTCGGCAGCTCAATACTTATgtaagttgttaactctatagatgctttggtttcatgttctatgatgcggttgaggtgtgctgaaatcctactaccttatttgtggaatgaattacagttaggtactgtttgttttcgtgtttttaaccctgtaagcgattgcaccactgtag

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: GRMZM2G132971_T01 (Zea mays), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgctacctaggttcaag--gaggggtgctgggaagagggggaat-gcggctggggcggccgccggggagcc
|||  | || ||| | || |     |||| |  ||   |||| || |   |||||||||||||||| |||||||||||||| || |||||||| || |||||||||      |    | |  ||       |      ||| | |   |  |||| ||||||  |          |      |||   |     | |  |   
CTTTGTAGTTTGGGATCCTCATATCTTTGGGACGGTGCTGCTGCCAAGGTACTTCAAGCACAACAACTTCTCCAGCTTTGTTCGGCAGCTCAATACTTATgtaagttgttaactctatagatgctttggtttcatgttctatgatgcggttgaggtgtgctgaaatcctactaccttatttgtggaatgaattacagtta---

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: GRMZM2G165972_T01 (Zea mays), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgctacctaggttcaaggaggggtgctgggaagagggggaatgcggctggggcggcc--gccggggagcc-------
 ||| | || ||| | || |  | ||| ||    |   |||| ||||    ||| ||||||||||| |||||||||||||| |||||||| ||||||||||| ||| |||           || ||   |||||||   | | |     | |   |  ||      |  ||  |   ||| | |||  |  |    | ||         
TTTCGTGGTCTGGGATCCCCACGTGTTCGCCGCCGTGCTGCTCCCCAGGTTCTTTAAGCACAACAACTTCTCCAGCTTTGTCCGCCAGCTGAACACCTATgtgagtgcccca---------agtactctgcttgctcagttgctgtcgtgtgattttttgtttctggttggctttgtgctcgcgcgctctggttttgcagttcatctcg

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: GRMZM2G026742_T01 (Zea mays), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccc-cggcaaggttgcagcaccaagcttgctacctaggttcaaggaggggtgctgggaagagggggaatgcg---gctggggcggccgcc-ggggagcc-
|||| |  | ||| |  | |  |  |||| ||| ||| |||| ||   |||||||||||||||| | ||| |||||||  | ||||||||||||||||| || ||     || | ||  ||  ||       ||  |   |      |  |     || | | | ||      ||||     |||     |   ||   ||   | 
CTTCGTGATCTGGGACTCGCACGTTTTTGAGCGCGACCTGCTTCCGCGACACTTCAAGCACAACCACTTCACCAGCTTCATACGCCAGCTCAACACCTACgtgaggattacgcctagcctgatgc------tttattggatgaagctactgctaattgtttgcatgaaactttatgcttgtactgaaatagtgacctatggtatca

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: GLYMA13G16510.1 (Glycine max), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcacca-agcttgctacctaggttcaaggaggggtgctgggaag----agggggaatgcggctggggcggccgccggggagcc
 ||||| || ||| |  | |  || ||  |        | || || ||  ||||||||||||  |||||||||||||| || |||||||||||||||||||| ||||      ||  || ||   ||  |||||     ||| ||   |  |    |      |      | |     | |     ||               | 
TTTCATCGTTTGGGACTCTCACGAATTCTCCAAATCACTTCTCCCTAAGTACTTCAAGCACAGTAATTTCTCCAGCTTCGTTCGCCAGCTCAACACCTATgtcagtca-----aattttccacttccttagcttttcttctatgtctcattaattttctctaaattttctatgtcctcttctttctggaaaattatacttatact

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: GLYMA17G34540.1 (Glycine max), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgctacctaggt-tcaaggaggggtgctgggaagagggggaatgcggctggggcggccgccggggagcc
|||  | || ||| |  | |   ||||| |     || | || ||     |||||||||||  |||||||||||||||  | |||||||||||||||||||||||| | |     |    |      |   ||  ||  ||  | |  | || |  || |     |   | |   | |  |   | |      ||   |  
CTTTGTCGTGTGGGACTCTCACAAGTTTTCTGCTCACATTCTGCCTCGTTACTTCAAGCACGCCAATTTCTCCAGCTTCATTCGCCAGCTCAACACCTATgtaagtactcactgtgtgctctttgaaattttttgtatgtaactgttcatgatgcatggttttgtgtctgagttggtgtttaatgtgttttaaggattgg-

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: GLYMA04G05500.1 (Glycine max), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgct--acctaggttcaaggaggggtgctgggaagagggggaa-tgcggctggggcggccgccggggagcc
 ||| | || ||| |  | |   ||||  |      | | || ||     |||||||||||||||||||||||||||| || || || ||||||||||| |||||   |   |    |  |  |  |   ||| ||  |||  | ||| |  |  |   ||| |||       || |     ||| || |             
TTTCGTCGTTTGGGACTCTCACAAGTTCTCTACCACCATCCTGCCTCGCTACTTCAAGCACAACAATTTCTCCAGCTTCGTACGACAACTCAACACCTACgtaagcatcattct---tctcttcctcgtacttactttaccgtgtttctataactga--ctgtgaattctaacaactaacattggtgcag-------------

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: GLYMA17G06160.1 (Glycine max), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgctacctaggttcaaggaggggtgctgggaagagggggaatgcggctgggg-cggccgccggggagcc--
 ||| | || ||| |  | |  |||||  |      | | || || ||  ||||||||||||  |||||||| ||||| || |||||||||||||||||||| ||||           | || |   |   || || | | |  |||          |||    ||    || |     ||    |  |   | || |     
TTTCGTCGTTTGGGACTCGCACGAGTTCTCCAAAACCCTTCTCCCAAAGTACTTCAAGCACAGTAATTTCTCAAGCTTCGTTCGCCAGCTCAACACCTATgtcagtc---aattttcctacatccttaccttttcttctttgcctcattatttttcactgtcctgaatctgattctttatgtcctcttctttctggaaattaa

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: GLYMA14G11030.1 (Glycine max), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagca--ccaagcttgctacctaggttcaaggaggggtgctgggaagagggggaatgcggctggggcggccgccggggagcc
|||  | || ||| |  | |   ||||| |    ||| | || ||     |||||||||||  |||||||||||||||  | |||||||||||| ||||||||||| |       | |    | |     || |||  ||| |  ||  | |   |||| |                 || ||  |  | | |         
CTTTGTGGTGTGGGATTCTCACAAGTTTTCTGCTGACATTCTGCCTCGTTACTTCAAGCACGGCAATTTCTCCAGCTTCATTCGCCAGCTCAACGCCTATgtaagtactgactttgttctttgaaattttagtttgtgaccaa--ttacatgcatggtgtttcatgtgcttaagggttggttgatgttgtccctttatttat

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: GLYMA16G13400.1 (Glycine max), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagctt-gctacctaggttcaaggaggggtgctgggaagagggggaatgcggctggggcggcc--gccggggagcc--
 ||| | || ||||| || || ||||| ||  | ||  |  | ||||||||||||||||||||||| ||||||||||| || |||||  | |||||||| ||| | |  |  |    |   |    ||  ||| |  ||  ||     || |   | |||  | |       | | |   |   ||       | | | |     
TTTCGTGGTTTGGAACCCTCCCGAGTTCGCCAGAGATCTCTTGCCCAAACACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAATTAAACACCTACgtatgccaactcctccttcttactttcatactttgtcactcag-----agaatttgcgctttgtaattttcaatttcattttccgctattaaactgcgcactttt

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: GLYMA10G38930.1 (Glycine max), 5'ss of exon 3
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagt-----ccccggcaaggttgcag---caccaagcttgctac----ctaggttcaaggaggggtgctgggaagagggggaatgcggctggggcggccgccggggagcc
|||| |||| ||| | |||| ||  ||| ||     | | || ||||||  |||||||||||||||||||||||| |||||  | || |||||||||||||| |||     | |   | |  |  ||     ||  | | || | |     ||  ||          | ||| || |||  | ||||  | ||                   
CTTCGTTGTGTGGGATCCACAGGCCTTTTCGGTAACCCTTCTCCCCAAATTCTTCAAGCACAACAATTTCTCCAGTTTTGTCAGGCAACTCAACACCTATgtcagtaacttctctttctacttcacaatcatacataacatgatgctaatttattttattcttctcctactgtgatgagatgaaatgttgttgacattat------------

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: GLYMA20G28870.1 (Glycine max), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaa-gcttgctacctag-gttcaaggaggggtgctgggaagaggggg-aatgcggctggggcggccgccggggagcc
|||| |||| ||| | |||| ||  ||| |      | | || ||||||  |||||||||||||||||||||||| |||||  | || |||||||||||||| |||            | |  | | |     |   || |   ||| |        | ||   |         | || |            |  |       
CTTCGTTGTGTGGGATCCACAGGCCTTTTCCATAACCCTTCTCCCCAAATTCTTCAAGCACAACAATTTCTCCAGTTTTGTCAGGCAACTCAACACCTATgtcagttatttctctttctactccccaatcatatataacatgatgtttattttattcttctcctagtttttcttagtgtgatgaaatgaaatgttgtttt---

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: GLYMA10G00560.1 (Glycine max), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgctacctaggtt--caaggaggggtgctgggaagagggggaatgcggctggggcggccgccggggagcc
|||| |||| ||| | || | ||  ||| |   |    | || |||| | ||||| |||||||||| ||||||||||||||  | || ||||||||||||||| ||     | |   |||||     |   |   ||| ||   |    |  |    |   |   | |     | |  |        | |  |     |   
CTTCGTTGTGTGGGATCCTCAGGCTTTTTCCGTGACTCTTCTCCCCAGATACTTCGAGCACAACAACTTCTCCAGCTTTGTCAGACAACTCAACACCTATgtatgtatattg-atctttgcatgtttatagtatgtacataatatgcttataaaaaatatggtatatacatatagtatgatccacatgacatcatcatatt-

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: GLYMA10G03530.1 (Glycine max), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagt----ccccggcaaggt---tgcagcacca--agcttgctacctaggttcaagg---aggggtgctgggaagagggggaatgcggctggggcggccgccggggagcc
|||  | || ||| | |||      ||  |        | || |||| | |||||||||||||||||||||| ||||||||  | || || ||||| |||||| ||     |    ||   |   | ||   | |  |  || |   | |  || || |   | |  |  |   |   |     ||  |  |  |   ||            
CTTTGTGGTTTGGGATCCAAATACCTTCTCTACAAGTCTTCTTCCCAGATACTTCAAGCACAACAATTTCTCAAGCTTTGTCAGGCAACTAAACACTTATgtatgtattatcttatcacaatcttttcaattcaattaattttccttcaatatttaatgtctatgtttttttcaatcggaaaatattagtttttgttagc------------

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: AT4G17750.1 (Arabidopsis thaliana), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgctacc-taggttcaaggaggggtgctgggaagaggggg-aatgcggctgggg-----cggccgccggggagcc------------------------------------------
||||||||| ||| | |||||||||||| | || ||  | ||||| ||| ||||||| ||||||||||||||||||||||| |||||| | |||||||||||||||           | || || | ||  |  | ||| | | ||     |   || ||| | | ||      ||   | ||          |     |  | |                                            
CTTCATTGTTTGGGATCCACCGGAGTTTTCTCGTGATCTTCTACCTAAATACTTCAAACACAACAATTTCTCCAGCTTTGTTCGCCAGTTAAACACCTATgtaagtata-aattctctcgc-gccctaatttctccaccattgatttctctaattgtactgtgtatagattatgatttcgttgaataatcttagtgcttgatgtgtttgataagatttatatgattcatgtgccaattttgatgaacag

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: AT3G22830.1 (Arabidopsis thaliana), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgctacctaggttcaaggaggggtgctgggaagagggggaatgcggctggggcggccgccggggagcc----
||||||||| ||| | |||| ||  ||| |        | || |||| |  |||||||||||| || |||||||| ||||| |||||||||||||| |||||||||||    |     |  |    | |   |   ||  |  || |   |    ||     |     |    |    ||| |  |     |    |       
CTTCATTGTCTGGGATCCACAGGCCTTTTCTGTAACTCTCCTTCCCAGATTCTTCAAGCACAATAACTTCTCCAGTTTTGTCCGCCAGCTCAACACATATgtaagtcctaatct---ctatatatactaatatataacaaaactttatatatatatgtatatatatatgttcgtatttctgtg-tgattctcactaatttgagg

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: AT3G63350.1 (Arabidopsis thaliana), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgctacctaggttcaaggaggggtgctgggaagagggggaatgcggctggggcggccgccggggagcc----
 ||  | || ||| | ||||     ||  ||       | || ||   | |||||||||||||||| ||||||||||||||  | || || ||||| ||||| |||  |       ||| |  ||| || |   ||  ||   ||    |     |  |        | |         |     | |     || |  |    
TTTTGTCGTGTGGGATCCACATTCCTTCTCGGCCACTATTCTGCCTCTATACTTCAAGCACAACAACTTCTCCAGCTTTGTCAGACAACTTAACACTTATgtgagtatctct----gtttctccactaaacgaccttactgtattttttgttttttttttcactatagtgttcccttaatcttatgtcttggaggaactcaaca

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: AT3G02990.1 (Arabidopsis thaliana), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaag-gttgcagcaccaagcttgctacctaggttcaaggaggggtgctgggaagagggggaatgcggctggggcggccgccggggagcc
|||| | || |||||    || ||||| ||     | || ||||| ||  | |||||||||||||||||||||||||| ||  | |||||||| || ||||| |||   |  | |  | | |      |    |  | |      |  |   |   | ||   |    |  |   |    | |||   |   |     |  
CTTCGTGGTTTGGAACGTGCCTGAGTTCGCCAAACAGTTTCTACCAAAGTATTTCAAGCACAACAATTTCTCCAGCTTCGTCAGACAGCTCAATACTTATgtgagtgaacttcgatcgattcttttttatttgtttttctcttcattgattcgattttcttcaatttcgtagttcgattttagggaatcttactttatgt-

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: Vv00s0179g00150.t01 (Vitis vinifera), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagt-----ccccggcaaggttgcagcaccaagcttgctacctaggttcaaggaggggtgctgggaagagggggaatgcggctggggcggccgccggggagcc
|||  |||||||| | || |  |  ||  |     |  | || |||||| ||||||||||||| |||||||| ||||||||  | ||||||||||| |||||||||     |  |  |||  |   |   ||| |  |   |  |  |         || | || | ||         |  |  ||          |  |     
CTTTGTTGTATGGGACCCCCATGCCTTCTCCACCAATCTCCTCCCCAAAAACTTCAAGCACAATAATTTCTCAAGCTTTGTCAGGCAGCTCAACACTTATgtaagtattagcttcaacaaaatc-taattccagggatatcagatgagaattcccttggattcttgaaatcccacatctctgtatgcttactgaatcatga----

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: Vv04s0008g01110.t01 (Vitis vinifera), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgctacctaggttcaaggaggggtgctgggaagagggggaatgcggctggggcggccgccggggagcc-------
||||||||| ||| |  | |   ||||  |        | || ||||   ||||||||||||  || |||||||||||  | |||||||||||||| ||||||||| | | | |   ||   ||  |    || || | ||  ||   |      | |  ||        |  |  |    |||     |     |           
CTTCATTGTTTGGGATTCGCACAAGTTCTCTACTACTCTTCTTCCCAGGTACTTCAAGCACAGTAACTTCTCCAGCTTCATTCGCCAGCTCAACACATATgtaagtgctctgaa---tttgggcttc----tttcttcttaattttctgtgatcttacctgggttgcttcggttttgctctgggaattggtttttgtattctgggtt

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: Vv16s0039g01840.t01 (Vitis vinifera), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaa--ggttgcagcaccaagcttgctacctaggttcaaggaggggtgctgggaagagggggaatgcggctggggcggccgccggggagcc
|||  |||| |||||    ||||||||  |  | ||| |  | |||||  ||||||||||||| |||||||||||||||||| | ||| | || || ||||| |||     |     | || |           |||| | |  | |   ||    |     |  |  |   |  ||    || ||     |  | |  |  
CTTTGTTGTCTGGAATGTTCCGGAGTTCTCTAGAGACCTTTTGCCCAAGTACTTCAAGCACAATAATTTCTCCAGCTTTGTGAGGCAGTTGAATACTTATgtgagtgtttcgtttttgttttcgatttttgttctgctgc-tgtgctgttggttctgaatgcgtgatcgcttgtttggatttgtggaaattgtggtgtggt-

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: Vv05s0020g04090.t01 (Vitis vinifera), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagt---------ccccggcaa----ggttgcagcaccaagcttgctacctaggttcaaggaggggtgctgggaagagggggaatgcggctggggcggccgccggggagcc
|||  |||||||| | || | |   |||||  || |  | || || | | | |||||||| ||||||||||| ||||||||  | || |||||||| |||||||||         | ||| |||    | | |    | | | | |  |       ||          |||    || | |  |||  | | ||   | ||            
CTTTGTTGTATGGGATCCTCAGATCTTTGCCGGGAATCTTCTTCCGAGATATTTCAAGCATAACAATTTCTCAAGCTTTGTTAGGCAACTCAACACTTATgtaagtattctcttccaccgacaattcagatagtttaatccaacctcatcttatcttttgcaattttttgcctaaaaaaagaagaaaactgttga--ctgct-----------

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: Vv02s0012g01810.t01 (Vitis vinifera), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgctacctaggttcaaggaggggtgctgggaagagggggaatgcggctggggcggccgccggggagcc-
|||| | || ||||| || || ||||| ||  | ||| |  |||| ||  ||||||||||||||||||| || ||||||||| | ||| | ||||| |||||| |       |  | ||    |       ||     ||   ||  |       | ||   |  |        || |||  ||  |     |  |     
CTTCGTGGTTTGGAACCCTCCCGAGTTCGCAAGAGACCTTTTACCGAAGTACTTCAAGCACAACAATTTTTCGAGCTTTGTGAGGCAGTTGAACACATATgtatgaatttatcttgcttctctccagttcattaaagtctttcttttattgcttttactttaatcattcaatg-gccgctatggatgttaatgacgccttt

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: PP1S42_157V6.1 (Physcomitrella patens), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgctacctaggttcaaggaggggtgctgggaagagggggaatgcgg-ctggggcggccgccggggagcc--
|||  | || ||||| || ||||| ||||| | ||| ||| | |||||  ||||||||||||||||||| |||||||| || || ||||||||||| || ||||||| | |  |   | ||  |  ||       |  ||  | |   |||  |||  ||| |   | |  ||   || |||  |  || |  ||     |  
CTTTGTCGTTTGGAATCCTCCGGAATTTGCACAGGATTTGTTGCCCAAGTACTTCAAGCACAACAATTTTTCCAGCTTCGTCCGGCAGCTCAACACTTACgtaagtcactg-tattctcgcttcttcacctcacttttcttcgat--gggactggtattggcattggcgttaagctgggctgcaggagcagttggacgtactc

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: PP1S31_388V6.2 (Physcomitrella patens), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgctacctaggttcaaggaggggtgctgggaagagggggaatgcggctggggcggccgccggggagcc-------
|||| | || |||||  | ||||| || || | ||| ||| | |||||  ||||||||||||| ||||| |||||||| || || || |||||||| || |||||||   | |    || |      |  |||||| | |    |||           |||  |  | || ||||  |   |||   |   | || |          
CTTCGTAGTTTGGAATACTCCGGAATTCGCACAGGAATTGTTGCCCAAGTACTTCAAGCACAATAATTTTTCCAGCTTCGTCCGGCAACTCAACACTTACgtaagtcattgtc----tttctctttaagtcttgctcctttatctcaccc---tcctttggtgacggtggtaatggcgtcagggtatcttgcaggtactgtttgtac

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: EFJ28302 (Selaginella moellendorffii), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgctacctaggttcaaggaggggtgctgggaagagggggaatgcggctggggcggccgccggggagcc
|||| | || ||||| || | ||| ||  ||||||| ||||| |||||  |||||||||||||||| ||||||||||| || || ||||||||||||||||| ||| | |       |  |     |||   | | |  |   ||| ||    | |  ||    ||        |||    | ||  |  | |       
CTTCGTGGTGTGGAACCCGCTGGATTTCTCGCGGGATTTGCTGCCCAAGTACTTCAAGCACAACAACTTCTCCAGCTTCGTCCGGCAGCTCAACACCTATgtgagttctctctcctctcccctgcgcaattcttccattt---ttccagctttgat-ttgatctgactttaccagcgcactgtgct-ctacag-------

upper sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: EFJ20325 (Selaginella moellendorffii), 5'ss of exon 1
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgctacctaggttcaaggaggggtgctggg-aagagggggaatgcggctggggcggccgccggggagcc
|||| | || ||||| || | ||| ||  ||||||| ||||| |||||  |||||||||||||||| ||||||||||| || || ||||||||||||||||| ||| | |       |  |     |||   | | |  |   ||| ||    | |  |     |       |  ||     |  |  | |          
CTTCGTGGTGTGGAACCCGCTGGATTTCTCGCGGGATTTGCTGCCCAAGTACTTCAAGCACAACAACTTCTCCAGCTTCGTCCGGCAGCTCAACACCTATgtgagttctctctcctctcccctgcgcaattcttccattt---ttccagctttgattttatctgactttaccagcgcactgtgctctacag----------

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgctacctaggttcaaggaggggtgctgggaagagggggaatgcggctggggcggccgccggggagcc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagcacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcggct