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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGACGACAAGCTGATTGCCGTTCACGCCGACGACCCGGAGTACAAGGGCTTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgtgcgggaaaacagggagcctcagggaaaggtgtgggatagtgccaagtcggatgaggcgcaactcagcagtagagcagcaagccgagatgtgctgaccacgtccaccaacgagtgctgacgcggcttcgtctgaccgtgctgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP02064
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP02064 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: GRMZM2G104918_T03 (Zea mays), 5'ss of exon 7
GCGACGACAAGCTGATTGCCGTTCACGCCGACGACCCGGAGTACAAGGGCTTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgtgcgggaaaacagggagcctcagggaaaggtgtgggatagtgccaagtcggatgaggcgcaactcagcagtagagcagcaagccgagatgtgctgac-cacg-tccaccaacgagtgctgacgcggcttcgtctgaccgtgctgcag
              || || ||    || || || || || |||     || || |||||||||| ||||| ||||||||||||||   ||||||||||| | | |        ||| |  |  | |||| |   ||    |  | |  |  |       |   |    | |  |    | ||  | ||     |     |  | |  | | | |   | |||   ||  |                         
--------------ATAGCAGTATGTGCTGATGATCCTGAATACCGTCACTACAACGACATCAGCGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTT-------GAAGATTgt-atcctccgcttaattcatttgctgttttcttactacacatgctctagcatattt-tggatgatcacattcacgcaggtaggcatatgcttccttagcgatatctctcag-----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161821353|gb|FC109492.1|FC109492
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|14238456|gb|BG857272.1|BG857272
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|14231499|gb|BG850315.1|BG850315
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGGTCGTGGACG
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGG-TCGTGGACG
EST: gi|161821967|gb|FC107623.1|FC107623
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|161815965|gb|FC099916.1|FC099916
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|161809458|gb|FC096515.1|FC096515
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|161794542|gb|FC080819.1|FC080819
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|9027974|gb|BE238014.1|BE238014
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|161822375|gb|FC111125.1|FC111125
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|14231498|gb|BG850314.1|BG850314
EST:     TTCACCGACATCAGCCAGCTGCCTNCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGGTGGTCGTGGACG
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGG-TGGTCGTGGACG
EST: gi|16072471|gb|BI874467.1|BI874467
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACCTACA-GAAGAACGAG
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGAC-TACAAGAAGAACGAG
EST: gi|161818141|gb|FC102289.1|FC102289
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|14238480|gb|BG857296.1|BG857296
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|161800071|gb|FC087594.1|FC087594
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|161797736|gb|FC085184.1|FC085184
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|6544656|gb|AV390440.1|AV390440
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|161809582|gb|FC097393.1|FC097393
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|10126294|gb|BE724998.1|BE724998
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|161793042|gb|FC081360.1|FC081360
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|161800748|gb|FC084709.1|FC084709
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|161817310|gb|FC104916.1|FC104916
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|14229106|gb|BG847922.1|BG847922
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|7709610|gb|AW772981.1|AW772981
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|161819523|gb|FC108312.1|FC108312
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|14231500|gb|BG850316.1|BG850316
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|161809363|gb|FC097096.1|FC097096
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|14240092|gb|BG858908.1|BG858908
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|161811254|gb|FC095353.1|FC095353
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|161823017|gb|FC106587.1|FC106587
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|161802096|gb|FC089658.1|FC089658
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|15369487|gb|BI528913.1|BI528913
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGGTCGTGGACG
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGG-TCGTGGACG
EST: gi|161810532|gb|FC094982.1|FC094982
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|14242577|gb|BG861393.1|BG861393
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|161817261|gb|FC104906.1|FC104906
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|161793555|gb|FC078467.1|FC078467
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|23362525|gb|BU650345.1|BU650345
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|161823426|gb|FC105748.1|FC105748
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|16071678|gb|BI873674.1|BI873674
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|161820862|gb|FC108949.1|FC108949
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|161823425|gb|FC105747.1|FC105747
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|15368172|gb|BI527598.1|BI527598
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|161803656|gb|FC090568.1|FC090568
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
EST: gi|14229353|gb|BG848169.1|BG848169
EST:     TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCG                         GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA
genomic: TTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgt ... cgtgctgcagGTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGACGACAAGCTGATTGCCGTTCACGCCGACGACCCGGAGTACAAGGGCTTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgtgcgggaaaacagggagcctcagggaaaggtgtgggatagtgccaagtcggatgaggcgcaactcagcagtagagcagcaagccgagatgtgctgaccacgtccaccaacgagtgctgacgcggcttcgtctgaccgtgctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA