1 5' 3' | 2 5' 3' | 3 5' 3' |
CAAGGCCGGCGCCCAGATCTTCTCTGAGGGCGGCCTGGACTACCTGGGCAACCCCTCTCTGGTGCACGCCCAGAACATCGTCGCCACCCTGGCTGTGCAGgtgacccttgctttgtcgtactcgttgagcgggtgggaagcgggattccaagggtgggcaggtgtcactggttcaggatagagcctgggttcgattgcag...
species | Chlamydomonas reinhardtii |
transcript | EDP01725 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACCCCTCTCTGGTGCACGCCCAGAACATCGTCGCCACCCTGGCTGTGCAG GTCATCCTTATGGGCCTGATTGAGGGCTACCGCGTCAACGGCGGCCCGGCTEST: gi|161797166|gb|FC087149.1|FC087149
genomic: ACCCCTCTCTGGTGCACGCCCAGAACATCGTCGCCACCCTGGCTGTGCAGgtgacccttg ... cacccctcagGTCATCCTTATGGGCCTGATTGAGGGCTACCGCGTCAACGGCGGCCCGGCT
EST: ACCCCTCTCTGGTGCACGCCCAGAACATCGTCGCCACCCTGGCTGTGCAG GTCATCCTTATGGGCCTGATTGAGGGCTACCGCGTCAACGGCGGCCCGGCTEST: gi|10776611|gb|AV633291.1|AV633291
genomic: ACCCCTCTCTGGTGCACGCCCAGAACATCGTCGCCACCCTGGCTGTGCAGgtgacccttg ... cacccctcagGTCATCCTTATGGGCCTGATTGAGGGCTACCGCGTCAACGGCGGCCCGGCT
EST: ACCCCTCTCTGGTGCACGCCCAGAACATCGTCGCCACCCTGGCCGTGCAG GTCATCCTGATGGGCCTGATTGAGGGCTACCGCGTCAACGGCGGCCCTGCTEST: gi|49461465|gb|BP089378.1|BP089378
genomic: ACCCCTCTCTGGTGCACGCCCAGAACATCGTCGCCACCCTGGCTGTGCAGgtgacccttg ... cacccctcagGTCATCCTTATGGGCCTGATTGAGGGCTACCGCGTCAACGGCGGCCCGGCT
EST: ACCCCTCTCTGGTGCACGCCCAGAACATCGTCGCCACCCTGGCCGTGCAG GTCATCCTGATGGGEST: gi|7426818|gb|AW660991.1|AW660991
genomic: ACCCCTCTCTGGTGCACGCCCAGAACATCGTCGCCACCCTGGCTGTGCAGgtgacccttg ... cacccctcagGTCATCCTTATGGG
EST: ACCCCTCTCTGGTGCACGCCCAGAACATCGTCGCCACCCTGGCCGTGCAG GTCATCCTGATGGGCCTGATTGAGGGCTACCGCGTCAACGGCGGCCCTGCT
genomic: ACCCCTCTCTGGTGCACGCCCAGAACATCGTCGCCACCCTGGCTGTGCAGgtgacccttg ... cacccctcagGTCATCCTTATGGGCCTGATTGAGGGCTACCGCGTCAACGGCGGCCCGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGGCCGGCGCCCAGATCTTCTCTGAGGGCGGCCTGGACTACCTGGGCAACCCCTCTCTGGTGCACGCCCAGAACATCGTCGCCACCCTGGCTGTGCAGgtgacccttgctttgtcgtactcgttgagcgggtgggaagcgggattccaagggtgggcaggtgtcactggttcaggatagagcctgggttcgattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggttc