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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCGgtaagttgcctggatcaggggctttgcccaaacccaaaaccaccaacacgccagcgtgccgctgcaactgaacccctgtgtcccggttccaggtttcactactgtcatcccaaactctcggtgatatcattgggtccgccgtcttatacctcctgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP01675
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8576473|gb|BE129014.1|BE129014
EST:     GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCG                         GCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
genomic: GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCGgtaagttgcc ... cctcctgcagGCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
EST: gi|10127075|gb|BE725779.1|BE725779
EST:     GATCGCCCGCGAGGAGGGTCCTGCATCTCTGCGGAAGGGCATTGAGCCCG                         GCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
genomic: GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCGgtaagttgcc ... cctcctgcagGCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
EST: gi|15367917|gb|BI527343.1|BI527343
EST:     GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCG                         GCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
genomic: GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCGgtaagttgcc ... cctcctgcagGCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
EST: gi|161819692|gb|FC110730.1|FC110730
EST:     GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCG                         GCCTGCATCGGCAATGTTTGTTTGGCGGTCTGCGCATCGGCCTTTACGAGC
genomic: GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCGgtaagttgcc ... cctcctgcagGCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
EST: gi|8513770|gb|BE121665.1|BE121665
EST:     GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCG                         GCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
genomic: GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCGgtaagttgcc ... cctcctgcagGCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
EST: gi|14235024|gb|BG853840.1|BG853840
EST:     GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCG                         GCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
genomic: GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCGgtaagttgcc ... cctcctgcagGCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
EST: gi|10778258|gb|AV634938.1|AV634938
EST:     GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCG                         GCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
genomic: GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCGgtaagttgcc ... cctcctgcagGCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
EST: gi|23363493|gb|BU651313.1|BU651313
EST:     GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCG                         GCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
genomic: GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCGgtaagttgcc ... cctcctgcagGCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
EST: gi|15705113|gb|BI729402.1|BI729402
EST:     GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCG                         GCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
genomic: GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCGgtaagttgcc ... cctcctgcagGCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
EST: gi|9210580|gb|BE337495.1|BE337495
EST:     GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCG                         GCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
genomic: GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCGgtaagttgcc ... cctcctgcagGCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
EST: gi|10770885|gb|AV621708.1|AV621708
EST:     GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCG                         GCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
genomic: GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCGgtaagttgcc ... cctcctgcagGCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
EST: gi|8400964|gb|BE056598.1|BE056598
EST:     GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCG                         GCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
genomic: GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCGgtaagttgcc ... cctcctgcagGCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
EST: gi|10782350|gb|AV639030.1|AV639030
EST:     GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCG                         GCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
genomic: GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCGgtaagttgcc ... cctcctgcagGCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
EST: gi|8933158|gb|BE227919.1|BE227919
EST:     GCATTGAGCCCG                         GCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
genomic: GCATTGAGCCCGgtaagttgcc ... cctcctgcagGCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
EST: gi|10125696|gb|BE724400.1|BE724400
EST:     GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCG                         GCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
genomic: GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCGgtaagttgcc ... cctcctgcagGCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
EST: gi|15373603|gb|BI533029.1|BI533029
EST:     GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCG                         GCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
genomic: GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCGgtaagttgcc ... cctcctgcagGCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
EST: gi|161812247|gb|FC097815.1|FC097815
EST:     GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCG                         GCCTGCATCGGCAATGTTTGTTTGGCGGTCTGCGCATCGGCCTTTACGAGC
genomic: GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCGgtaagttgcc ... cctcctgcagGCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
EST: gi|161810681|gb|FC096834.1|FC096834
EST:     GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCG                         GCCTGCATCGGCAATGTTTGTTTGGCGGTCTGCGCATCGGCCTTTACGAGC
genomic: GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCGgtaagttgcc ... cctcctgcagGCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
EST: gi|15910544|gb|BI816399.1|BI816399
EST:     GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCG                         GCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC
genomic: GATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCGgtaagttgcc ... cctcctgcagGCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGTATGCTTGGCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGCCCGgtaagttgcctggatcaggggctttgcccaaacccaaaaccaccaacacgccagcgtgccgctgcaactgaacccctgtgtcccggttccaggtttcactactgtcatcccaaactctcggtgatatcattgggtccgccgtcttatacctcctgcag

- - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG