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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGTGCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagcatggtcaatggaggagcgcggcatagcgggttgcgggctgtggggcaacgggcgacgggtgtggacaccgtgggggtgacgcttggtgctg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP01658
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP01658 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: LOC_Os11g29190.5 (Oryza sativa), 5'ss of exon 2
CCTGTGCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagcat-ggtcaatggaggagcgcggcatagcgggttgcgggctgtggggcaa--cgggcgacgggtgtggacaccgtggg--ggtgacgcttggtgctg-------------------------------------------
   |  |||||| || ||||||||||||||||||||||| |||||| | ||||| ||| ||| | |    ||    | |          | |   |  | | |       | |  | ||  |  |  |  | || | |     ||| || |    |   |                                           
---GACCAACTCGCTCATGATGCACGGCCGCAACAACGGGAAGAAGATCATGGCCGTGCGCATCGTCAAGCACGCCATGGAGATCATCCACCTCCTCACCGACgccaaccccattcaggtcatcgtcgacgccatcatcaacaggtaaccccccctttcgcgcttcgctcgcccaatctctttcgaaccagtaaaattttacc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15372060|gb|BI531486.1|BI531486
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|7687072|gb|AW757720.1|AW757720
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|34990620|gb|CF564537.1|CF564537
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|34992204|gb|CF566121.1|CF566121
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGGTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|49467185|gb|BP095098.1|BP095098
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|49470065|gb|BP097926.1|BP097926
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|34990619|gb|CF564536.1|CF564536
EST:     GCAACTCCCTGATGATGCACGGTCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|6544623|gb|AV390407.1|AV390407
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|34984023|gb|CF557940.1|CF557940
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|7545796|gb|AW676284.1|AW676284
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|49459862|gb|BP087775.1|BP087775
EST:     TGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: TGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|22071482|gb|BQ820820.1|BQ820820
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|22073876|gb|BQ823206.1|BQ823206
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|22070734|gb|BQ820072.1|BQ820072
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|34991893|gb|CF565810.1|CF565810
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|49469400|gb|BP097261.1|BP097261
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|7545578|gb|AW676066.1|AW676066
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|49467337|gb|BP095250.1|BP095250
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|22076848|gb|BQ825624.1|BQ825624
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|15367729|gb|BI527155.1|BI527155
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|22071874|gb|BQ821212.1|BQ821212
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|49469717|gb|BP097578.1|BP097578
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|10793896|gb|AV631262.1|AV631262
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACC
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACC
EST: gi|161796628|gb|FC083140.1|FC083140
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTTGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|49467797|gb|BP095658.1|BP095658
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|34985639|gb|CF559556.1|CF559556
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|49466898|gb|BP094811.1|BP094811
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|49469762|gb|BP097623.1|BP097623
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|15701424|gb|BI725729.1|BI725729
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|6552163|gb|AV397947.1|AV397947
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|14237243|gb|BG856059.1|BG856059
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|49469778|gb|BP097639.1|BP097639
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|10793823|gb|AV631189.1|AV631189
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|22050075|gb|BQ809058.1|BQ809058
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|10778592|gb|AV635272.1|AV635272
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|6552159|gb|AV397943.1|AV397943
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|22076703|gb|BQ825479.1|BQ825479
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|49469184|gb|BP097045.1|BP097045
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|7616326|gb|AW721766.1|AW721766
EST:     GCAACTCCCTGATGATGCACGGGCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|22072448|gb|BQ821786.1|BQ821786
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|49461824|gb|BP089737.1|BP089737
EST:     CAACTCCCTGCATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTG
genomic: CAACTCCCTG-ATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTG
EST: gi|22074285|gb|BQ823380.1|BQ823380
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCCTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|49469841|gb|BP097702.1|BP097702
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|34994187|gb|CF568104.1|CF568104
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|49467223|gb|BP095136.1|BP095136
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|15367825|gb|BI527251.1|BI527251
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|34994188|gb|CF568105.1|CF568105
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|14242403|gb|BG861219.1|BG861219
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|22074623|gb|BQ823546.1|BQ823546
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|7593508|gb|AW707759.1|AW707759
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
EST: gi|34988453|gb|CF562370.1|CF562370
EST:     GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCG                         GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG
genomic: GCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagca ... cctgccgcagGTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTGTGCAACTCCCTGATGATGCACGGCCGCAACAACGGCAAGAAGCTGATGGCGgtgagcagcatggtcaatggaggagcgcggcatagcgggttgcgggctgtggggcaacgggcgacgggtgtggacaccgtgggggtgacgcttggtgctg

- - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtggac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggtgc