1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAAGACCACGCACCCCAGCTACGCAGCGCCCTTCAATGAGGTCATCCGCCGCTTCCGCGACTTCGCCTGGCTGCACGACAAGCTGGTAGAAAAGAACAAGgtgggggctgtgtgcggtatttgtgcgtgtacgtgtgcaaaaatgagcgggacttacaggcaaaccttgagaggaagtaaggagaagccggcaccgaact...
species | Chlamydomonas reinhardtii |
transcript | EDP01577 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCTTCCGCGACTTCGCCTGGCTGCACGACAAGCTGGTAGAAAAGAACAAG GGACTGATTGTGCCGCCGCTGCCCGAGAAGAGCGCGGTGCAGAAGTACCAAEST: gi|15697211|gb|BI721516.1|BI721516
genomic: GCTTCCGCGACTTCGCCTGGCTGCACGACAAGCTGGTAGAAAAGAACAAGgtgggggctg ... ccgtgcgcagGGACTGATTGTGCCGCCGCTGCCCGAGAAGAGCGCGGTGCAGAAGTACCAA
EST: GCTTCCGCGACTTCGCCTGGCTGCACGACAAGCTGGTAGAAAAGAACAAG GGACTGATTGTGCCGCCGCTGCCCGAGAAGAGCGCGGTGCAGAAGTACCAAEST: gi|161793423|gb|FC077295.1|FC077295
genomic: GCTTCCGCGACTTCGCCTGGCTGCACGACAAGCTGGTAGAAAAGAACAAGgtgggggctg ... ccgtgcgcagGGACTGATTGTGCCGCCGCTGCCCGAGAAGAGCGCGGTGCAGAAGTACCAA
EST: GCTTCCGCGACTTCGCCTGGCTGCACGACAAGCTGGTAGAAAAGAACAAG GGACTGATTGTGCCGCCGCTGCCCGAGAAGAGCGCGGTGCAGAAGTACCAAEST: gi|23367814|gb|BU655648.1|BU655648
genomic: GCTTCCGCGACTTCGCCTGGCTGCACGACAAGCTGGTAGAAAAGAACAAGgtgggggctg ... ccgtgcgcagGGACTGATTGTGCCGCCGCTGCCCGAGAAGAGCGCGGTGCAGAAGTACCAA
EST: GCTTCCGCGACTTCGCCTGGCTGCACGACAAGCTGGTAGAAAAGAACAAG GGACTGATTGTGCCGCCGCTGCCCGAGAAGAGCGCGGTGCAGAAGTACCAA
genomic: GCTTCCGCGACTTCGCCTGGCTGCACGACAAGCTGGTAGAAAAGAACAAGgtgggggctg ... ccgtgcgcagGGACTGATTGTGCCGCCGCTGCCCGAGAAGAGCGCGGTGCAGAAGTACCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGACCACGCACCCCAGCTACGCAGCGCCCTTCAATGAGGTCATCCGCCGCTTCCGCGACTTCGCCTGGCTGCACGACAAGCTGGTAGAAAAGAACAAGgtgggggctgtgtgcggtatttgtgcgtgtacgtgtgcaaaaatgagcgggacttacaggcaaaccttgagaggaagtaaggagaagccggcaccgaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acttaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaacct