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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGTGTTTGATGCCGACGTGAACGACGCGCGGGTGGTGACGGTGCCGCGCCTGGACGGCTTCCGCATCGACGTGGAGGCCGTCAAgtgagtgtgggccacatgggcatgaggcgggcagggaggtcgggcggcgcggcgtggcgtggcgtggcgtggcgtggcgtggcgtggcgtggcgtggcgt...

Basic information

species Chlamydomonas reinhardtii
transcript EDP01242
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16428804|gb|BI994014.1|BI994014
EST:     GTGACGGTGCCGCGCCTGGACGGCTTCCGCATTGACGTGGAGGCCGTCAA                         GCGTGCGGTGGTGGAGCACAAGCCCAAGGTGGTGTTCCTGACCAGCCCCAA
genomic: GTGACGGTGCCGCGCCTGGACGGCTTCCGCATCGACGTGGAGGCCGTCAAgtgagtgtgg ... accgcctcagGCGTGCGGTGGTGGAGCACAAGCCTAAGGTGGTGTTCCTGACCAGCCCCAA
EST: gi|23361878|gb|BU649714.1|BU649714
EST:     GTGACGGTGCCGCGCCTGGACGGCTTCCGCATCGACGTGGAGGCCGTCAA                         GCGTGCGGTGGTGGAGCACAAGCCTAAGGTGGTGTTCCTGACCAGCCCCAA
genomic: GTGACGGTGCCGCGCCTGGACGGCTTCCGCATCGACGTGGAGGCCGTCAAgtgagtgtgg ... accgcctcagGCGTGCGGTGGTGGAGCACAAGCCTAAGGTGGTGTTCCTGACCAGCCCCAA
EST: gi|15693220|gb|BI717525.1|BI717525
EST:     GTGACGGTGCCGCGCCTGGACGGCTTCCGCATCGACGTGGAGGCCGTCAA                         GCGTGCGGTGGTGGAGCACAAGCCTAAGGTGGTGTTCCTGACCAGCCCCAA
genomic: GTGACGGTGCCGCGCCTGGACGGCTTCCGCATCGACGTGGAGGCCGTCAAgtgagtgtgg ... accgcctcagGCGTGCGGTGGTGGAGCACAAGCCTAAGGTGGTGTTCCTGACCAGCCCCAA
EST: gi|16438059|gb|BM003279.1|BM003279
EST:     GTGACGGTGCCGCGCCTGGACGGCTTCCGCATCGACGTGGAGGCCGTCAA                         GCGTGCGGTGGTGGAGCACAAGCCTAAGGTGGTGTTCCTGACCAGCCCCAA
genomic: GTGACGGTGCCGCGCCTGGACGGCTTCCGCATCGACGTGGAGGCCGTCAAgtgagtgtgg ... accgcctcagGCGTGCGGTGGTGGAGCACAAGCCTAAGGTGGTGTTCCTGACCAGCCCCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTACGTGTTTGATGCCGACGTGAACGACGCGCGGGTGGTGACGGTGCCGCGCCTGGACGGCTTCCGCATCGACGTGGAGGCCGTCAAgtgagtgtgggccacatgggcatgaggcgggcagggaggtcgggcggcgcggcgtggcgtggcgtggcgtggcgtggcgtggcgtggcgtggcgtggcgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggcat