1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGAGATCGTGCCCGCCACCCTGAAGAAGTCCAACCGCCCCCTGGAGCGTGGCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggaggagagcgagacagaggagaggagggtggtggagggaggcggaagcggaggggaggacggctgggagacagcagcgcgtggattggactgtgg...
species | Chlamydomonas reinhardtii |
transcript | EDP00807 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCTGTGGCCCCCGCGAGGEST: gi|7545761|gb|AW676249.1|AW676249
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGG
EST: CCCGCCCATGCGCGGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTEST: gi|22055366|gb|BQ811781.1|BQ811781
genomic: CCCGCCCATGCGCGG-CGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTEST: gi|10791471|gb|AV628837.1|AV628837
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTEST: gi|8400927|gb|BE056561.1|BE056561
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTEST: gi|22055736|gb|BQ811996.1|BQ811996
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTEST: gi|22076840|gb|BQ825616.1|BQ825616
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGEST: gi|16072808|gb|BI874804.1|BI874804
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGG
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTEST: gi|22055379|gb|BQ811789.1|BQ811789
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTEST: gi|9210490|gb|BE337405.1|BE337405
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTEST: gi|34991020|gb|CF564937.1|CF564937
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTEST: gi|15700711|gb|BI725016.1|BI725016
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCTGTGGCCCCCGCGAGGGTGGCCGCGAGGGEST: gi|16073576|gb|BI875572.1|BI875572
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGG
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTEST: gi|10785308|gb|AV641980.1|AV641980
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCCAGGGCTACCGCGGTEST: gi|22057747|gb|BQ812714.1|BQ812714
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGT
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTEST: gi|6544611|gb|AV390395.1|AV390395
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTEST: gi|161799488|gb|FC086075.1|FC086075
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTEST: gi|22058393|gb|BQ812976.1|BQ812976
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTEST: gi|15702705|gb|BI727010.1|BI727010
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTACGGTGGCCCCEST: gi|15372078|gb|BI531504.1|BI531504
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCC
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTEST: gi|9459975|gb|BE453002.1|BE453002
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCNGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTEST: gi|16073280|gb|BI875276.1|BI875276
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTEST: gi|22072326|gb|BQ821664.1|BQ821664
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGEST: gi|34988701|gb|CF562618.1|CF562618
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTG
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTEST: gi|23363360|gb|BU651180.1|BU651180
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTEST: gi|22053726|gb|BQ810904.1|BQ810904
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTEST: gi|34984781|gb|CF558698.1|CF558698
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTEST: gi|34991521|gb|CF565438.1|CF565438
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTEST: gi|22055477|gb|BQ811843.1|BQ811843
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTEST: gi|22056585|gb|BQ812368.1|BQ812368
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTEST: gi|161813106|gb|FC104681.1|FC104681
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
EST: GCCCGCCCATGCGGGGCGGGGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTEST: gi|22055837|gb|BQ812082.1|BQ812082
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTEST: gi|22052860|gb|BQ810443.1|BQ810443
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTEST: gi|161813107|gb|FC104682.1|FC104682
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
EST: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAG GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
genomic: GCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggagga ... ctgcgtgcagGGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGATCGTGCCCGCCACCCTGAAGAAGTCCAACCGCCCCCTGGAGCGTGGCCCGCCCATGCGCGGCGGCGACCGCGGCGACCGCCCGCCCCGCCGTGAGgtgaggaggagagcgagacagaggagaggagggtggtggagggaggcggaagcggaggggaggacggctgggagacagcagcgcgtggattggactgtgg
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