1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGGCGCTACTCACTGCTGGAATATGTGCTGCGCCAGACGGAGCAGCTGCATGGTAGCGTGCGGAGGTACACGTCGCCTGATGAGCACGCCTTCTTCCCGGgtgcggcgcgtgtgtggcggctgtgaccagggcatgtggacgggcgagggcgtgatggacgggcgaggccgtgcccgagggcgcggtgctatcgccacac...
species | Chlamydomonas reinhardtii |
transcript | EDP00124 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGGTAGCGTGCGGAGGTACACGTCGCCTGATGAGCACGCCTTCTTCCCGG ACGACCTGCCGACGCTTGTGCTEST: gi|14228762|gb|BG847578.1|BG847578
genomic: TGGTAGCGTGCGGAGGTACACGTCGCCTGATGAGCACGCCTTCTTCCCGGgtgcggcgcg ... tgtcctccagACGACCTGCCGACGCTTGTGCT
EST: TGGTAGCGTGCGGAGGTACACGTCGCCTGATGAGCACGCCTTCTTCCCGG ACGACCTGCCGACGEST: gi|15694553|gb|BI718858.1|BI718858
genomic: TGGTAGCGTGCGGAGGTACACGTCGCCTGATGAGCACGCCTTCTTCCCGGgtgcggcgcg ... tgtcctccagACGACCTGCCGACG
EST: TGGTAGCGTGCGGAGGTACACGTCGCCTGATGAGCACGCCTTCTTCCCGG ACGACCTGCCGACGCTTGTGCTGCCGCCCATCACCTACCCCTCGGTGCTGGEST: gi|16430742|gb|BI995968.1|BI995968
genomic: TGGTAGCGTGCGGAGGTACACGTCGCCTGATGAGCACGCCTTCTTCCCGGgtgcggcgcg ... tgtcctccagACGACCTGCCGACGCTTGTGCTGCCGCCCATCACCTACCCCTCGGTGCTGG
EST: TGGTAGCGTGCGGAGGTACACGTCGCCTGATGAGCACGCCTTCTTCCCGG ACGACCTGCCGACGCTTGTGCTGCCGCCCATCACCTACCCCTCGGTGCTGG
genomic: TGGTAGCGTGCGGAGGTACACGTCGCCTGATGAGCACGCCTTCTTCCCGGgtgcggcgcg ... tgtcctccagACGACCTGCCGACGCTTGTGCTGCCGCCCATCACCTACCCCTCGGTGCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCGCTACTCACTGCTGGAATATGTGCTGCGCCAGACGGAGCAGCTGCATGGTAGCGTGCGGAGGTACACGTCGCCTGATGAGCACGCCTTCTTCCCGGgtgcggcgcgtgtgtggcggctgtgaccagggcatgtggacgggcgagggcgtgatggacgggcgaggccgtgcccgagggcgcggtgctatcgccacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtgg