1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACGGCAGCTACGGCCCCGTGCTGGTGCGGCTGGCCTGGCACGCCTCCGGCACCTACGCCAAGAAGGACGGCAGCGGCGGCAGCAACGGGGCCACCATGCGgtgcgtgcggaggcatggggcgtgggggcggggggtcgtttgttccaatctttagttaacaaccaagattcaaaacattttttcatgattctcaactaga...
species | Chlamydomonas reinhardtii |
transcript | EDP00040 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACCTACGCCAAGAAGGACGGCAGCGGCGGCAGCAACGGGGCCACCATGCG CTTTGCTCCCGAGTGCGAGTGGNGCGCCAACGCGGGTCTGGCGGTGGCTCGEST: gi|22069998|gb|BQ819458.1|BQ819458
genomic: ACCTACGCCAAGAAGGACGGCAGCGGCGGCAGCAACGGGGCCACCATGCGgtgcgtgcgg ... atgcacacagCTTTGCTCCCGAGTGCGAGTGGGGCGCCAACGCGGGTCTGGCGGTGGCTCG
EST: ACCTACGCCAAGAAGGACGGCAGCGGCGGCAGCAACGGGGCCACCATGCG CTTTGCTCCCGAGTGCGAGTGGGGCGCCAACGCGGGTCTGGCGGTGGCTCGEST: gi|15693708|gb|BI718013.1|BI718013
genomic: ACCTACGCCAAGAAGGACGGCAGCGGCGGCAGCAACGGGGCCACCATGCGgtgcgtgcgg ... atgcacacagCTTTGCTCCCGAGTGCGAGTGGGGCGCCAACGCGGGTCTGGCGGTGGCTCG
EST: ACCTACGCCAAGAAGGACGGCAGCGGCGGCAGCAACGGGGCCACCATGCG CTNTGCTCCCGAGTGCGAGTGGGGCGCCAACGCGGGTCTGGCGGTGGCTCG
genomic: ACCTACGCCAAGAAGGACGGCAGCGGCGGCAGCAACGGGGCCACCATGCGgtgcgtgcgg ... atgcacacagCTTTGCTCCCGAGTGCGAGTGGGGCGCCAACGCGGGTCTGGCGGTGGCTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGGCAGCTACGGCCCCGTGCTGGTGCGGCTGGCCTGGCACGCCTCCGGCACCTACGCCAAGAAGGACGGCAGCGGCGGCAGCAACGGGGCCACCATGCGgtgcgtgcggaggcatggggcgtgggggcggggggtcgtttgttccaatctttagttaacaaccaagattcaaaacattttttcatgattctcaactaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattct