1 5' 3' | 2 5' 3' | 3 5' 3' |
TGGAGACGCTGCTGGAGCTGGCGGGGCCGGCGGAGCGCGCCGAGCTGATCAACCAGCCGGACAACTTCGGCGTCACGCCGCTGTTCCTGGCGCGGCAAAAgtgaggaggaggagggaggaggaggggaaaagggggagagggaagggggaggaggaggagggggaagaggcggaggagagggaaggggaaggtcgttgtt...
species | Chlamydomonas reinhardtii |
transcript | EDP00014 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AACCAGCCGGACAACTTCGGCGTCACGCCGCTGTTCCTGGCGCGGCAAAA GGACAAGGAGGGCCAGGACGCGTTCGAGTACATGCTGCTCAACGGCGGCCGEST: gi|14240703|gb|BG859519.1|BG859519
genomic: AACCAGCCGGACAACTTCGGCGTCACGCCGCTGTTCCTGGCGCGGCAAAAgtgaggagga ... ctacccccagGGACAAGGAGGGCCAGGACGCGTTCGAGTACATGCTGCTCAACGGCGGCCG
EST: AACCAGCCGGACAACTTCGGCGTCACGCCGCTGTTCCTGGCGCGGCAAAA GGACAAGGAGGGCCAGGACGCGTTCGAGTACATGCTGCTCAACGGCGGCCGEST: gi|15368381|gb|BI527807.1|BI527807
genomic: AACCAGCCGGACAACTTCGGCGTCACGCCGCTGTTCCTGGCGCGGCAAAAgtgaggagga ... ctacccccagGGACAAGGAGGGCCAGGACGCGTTCGAGTACATGCTGCTCAACGGCGGCCG
EST: AACCAGCCGGACAACTTCGGCGTCACGCCGCTGTTCCTGGCGCGGCAAAA GGACAAGGAGGGCCAGGACGCGTTCGAGTACATGCTGCTCAACGGCGGCCGEST: gi|15704585|gb|BI728906.1|BI728906
genomic: AACCAGCCGGACAACTTCGGCGTCACGCCGCTGTTCCTGGCGCGGCAAAAgtgaggagga ... ctacccccagGGACAAGGAGGGCCAGGACGCGTTCGAGTACATGCTGCTCAACGGCGGCCG
EST: AACCAGCCGGACAACTTCGGCGTCACGCCGCTGTTCCTGGCGCGGCAAAA AGGACAAGGAGEST: gi|14236711|gb|BG855527.1|BG855527
genomic: AACCAGCCGGACAACTTCGGCGTCACGCCGCTGTTCCTGGCGCGGCAAAAgtgaggagga ... ctacccccag-GGACAAGGAG
EST: AACCAGCCGGACAACTTCGGCGTCACGCCGCTGTTCCTGGCGCGGCAAAA GGACAAGGAGGGCCAGGACGCGTTCGAGTACATGCTGCTCAACGGCGGCCGEST: gi|15702746|gb|BI727051.1|BI727051
genomic: AACCAGCCGGACAACTTCGGCGTCACGCCGCTGTTCCTGGCGCGGCAAAAgtgaggagga ... ctacccccagGGACAAGGAGGGCCAGGACGCGTTCGAGTACATGCTGCTCAACGGCGGCCG
EST: AACCAGCCGGACAACTTCGGCGTCACGCCGCTGTTCCTGGCGCGGCANAA GGACAAGGAGGGCCAGGACGCGTTCGAGTACATGCTGCTCAACGGCGGCCG
genomic: AACCAGCCGGACAACTTCGGCGTCACGCCGCTGTTCCTGGCGCGGCAAAAgtgaggagga ... ctacccccagGGACAAGGAGGGCCAGGACGCGTTCGAGTACATGCTGCTCAACGGCGGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAGACGCTGCTGGAGCTGGCGGGGCCGGCGGAGCGCGCCGAGCTGATCAACCAGCCGGACAACTTCGGCGTCACGCCGCTGTTCCTGGCGCGGCAAAAgtgaggaggaggagggaggaggaggggaaaagggggagagggaagggggaggaggaggagggggaagaggcggaggagagggaaggggaaggtcgttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcgttgt