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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGCGAGTATCAGGGCGCTTACAAGgtgagcaatcacgactgagctgcgacacgtgcagcctttcggctgggttattcacgacgcaattgaactttcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98850
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDO98850 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: EFJ19158 (Selaginella moellendorffii), 5'ss of exon 2
GTTGGCGAGTATCAGGGCGCTTACAAGgtgagcaatcacgactgagctgcgacacgtgcagcctttcggctgggttattcacgacgcaattgaactttcgcag
||||| |||||||| ||||||||||||||||||| |  |   |   || |     ||| || ||| ||    ||| |   | | |   | | ||         
GTTGGAGAGTATCAAGGCGCTTACAAGgtgagcactttc--tttgtcttc--tgtgtgtagacttacgt---ggtaacaaatgtctggactaaag--------

upper sequence: EDO98850 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: EFJ13549 (Selaginella moellendorffii), 5'ss of exon 3
GTTGGCGAGTATCAGGGCGCTTACAAGgtgagcaatcacgactgagctgcgacacgtgcagcctttcggctgggttattcacgacgcaattgaactttcgcag
||||| |||||||| ||||||||||||||||||  ||     |   || |     ||| || ||| ||    ||| |   | | |   | | ||         
GTTGGAGAGTATCAAGGCGCTTACAAGgtgagc--tctttctttgtcttc--tctgtgtagacttacgt---ggtaacaaatgtctggactaaag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14240499|gb|BG859315.1|BG859315
EST:     GTTGGCGAGTATCAGGGCGCTTACAAG                         ATCACGAGAGGTCTGCTCCAAAAGTATGGGCCGGACCGCGTGAAGGACACG
genomic: GTTGGCGAGTATCAGGGCGCTTACAAGgtgagcaatc ... actttcgcagATCACGAGAGGTCTGCTCCAAAAGTATGGGCCGGACCGCGTGAAGGACACG
EST: gi|14233051|gb|BG851867.1|BG851867
EST:     GTTGGCGAGTATCAGGGCGCTTACAAG                         ATCACGAGAGGTCTGCTCCAAAAGTATGGGCCGGACCGCGTGAAGGACACG
genomic: GTTGGCGAGTATCAGGGCGCTTACAAGgtgagcaatc ... actttcgcagATCACGAGAGGTCTGCTCCAAAAGTATGGGCCGGACCGCGTGAAGGACACG
EST: gi|239842158|gb|GR284015.1|GR284015
EST:     GTTGGCGAGTATCAGGGCGCTTACAAG                         ATCACGAGAGGTCTGCTCCAAAAGTATGGGCCGGACCGCGTGAAGGACACG
genomic: GTTGGCGAGTATCAGGGCGCTTACAAGgtgagcaatc ... actttcgcagATCACGAGAGGTCTGCTCCAAAAGTATGGGCCGGACCGCGTGAAGGACACG
EST: gi|161818956|gb|FC110384.1|FC110384
EST:     GGTTGGCGAGTATCAGGGCGCTTACAAG                         ATCACGAGAGGTCTGCTCCAAAAGTATGGGCCGGACCGCGTGAAGGACACG
genomic: GGTTGGCGAGTATCAGGGCGCTTACAAGgtgagcaatc ... actttcgcagATCACGAGAGGTCTGCTCCAAAAGTATGGGCCGGACCGCGTGAAGGACACG
EST: gi|161795900|gb|FC087364.1|FC087364
EST:     GGTTGGCGAGTATCAGGGCGCTTACAAG                         ATCACGAGAGGTCTGCTCCAAAAGTATGGGCCGGACCGCGTGAAGGACACG
genomic: GGTTGGCGAGTATCAGGGCGCTTACAAGgtgagcaatc ... actttcgcagATCACGAGAGGTCTGCTCCAAAAGTATGGGCCGGACCGCGTGAAGGACACG
EST: gi|161821682|gb|FC108157.1|FC108157
EST:     GTTGGCGAGTATCAGGGCGCTTACAAG                         ATCACGAGAGGTCTGCTCCAAAAGTATGGGCCGGACCGCGTGAAGGACACG
genomic: GTTGGCGAGTATCAGGGCGCTTACAAGgtgagcaatc ... actttcgcagATCACGAGAGGTCTGCTCCAAAAGTATGGGCCGGACCGCGTGAAGGACACG
EST: gi|14233052|gb|BG851868.1|BG851868
EST:     GTTGGCGAGTATCAGGGCGCTTACAAG                         ATCACGAGAGGTCTGCTCCAAAAGTATGGGCCGGACCGCGTGAAGGACACG
genomic: GTTGGCGAGTATCAGGGCGCTTACAAGgtgagcaatc ... actttcgcagATCACGAGAGGTCTGCTCCAAAAGTATGGGCCGGACCGCGTGAAGGACACG
EST: gi|239841124|gb|GR282814.1|GR282814
EST:     GTTGGCGAGTATCAGGGCGCTTACAAG                         ATCACGAGAGGTCTGCTCCAAAAGTATGGGCCGGACCGCGTGAAGGACACG
genomic: GTTGGCGAGTATCAGGGCGCTTACAAGgtgagcaatc ... actttcgcagATCACGAGAGGTCTGCTCCAAAAGTATGGGCCGGACCGCGTGAAGGACACG
EST: gi|14238028|gb|BG856844.1|BG856844
EST:     GAGGAGGTTGGCGAGTATCAGGGCGCTTACAAG                         ATCACGAGAGGTCTGCTCCAAAAGTATGGGCCGGACCGCGTGAAGGACACG
genomic: GAGGAGGTTGGCGAGTATCAGGGCGCTTACAAGgtgagcaatc ... actttcgcagATCACGAGAGGTCTGCTCCAAAAGTATGGGCCGGACCGCGTGAAGGACACG
EST: gi|161792575|gb|FC081829.1|FC081829
EST:     GTTGGCGAGTATCAGGGCGCTTACAAG                         ATCACGAGAGGTCTGCTCCAAAAGTATGGGCCGGACCGCGTGAAGGACACG
genomic: GTTGGCGAGTATCAGGGCGCTTACAAGgtgagcaatc ... actttcgcagATCACGAGAGGTCTGCTCCAAAAGTATGGGCCGGACCGCGTGAAGGACACG
EST: gi|14242125|gb|BG860941.1|BG860941
EST:     GTTGGCGAGTATCAGGGCGCTTACAAG                         ATCACGAGAGGTCTGCTCCAAAAGTATGGGCCGGACCGCGTGAAGGACACG
genomic: GTTGGCGAGTATCAGGGCGCTTACAAGgtgagcaatc ... actttcgcagATCACGAGAGGTCTGCTCCAAAAGTATGGGCCGGACCGCGTGAAGGACACG