Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAAGCGTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgcaaagcaactgggcgggtgcgaagcgccaaggagccacactgacgagcatttctcccgccgacag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98665
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34993690|gb|CF567607.1|CF567607
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|16436386|gb|BM001606.1|BM001606
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|10772407|gb|AV623230.1|AV623230
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGAC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|10783596|gb|AV640268.1|AV640268
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|10776733|gb|AV633413.1|AV633413
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|10777068|gb|AV633748.1|AV633748
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|6545895|gb|AV391679.1|AV391679
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|10769591|gb|AV620416.1|AV620416
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|10772163|gb|AV622986.1|AV622986
EST:     GTCGGTTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|10778678|gb|AV635358.1|AV635358
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|34984847|gb|CF558764.1|CF558764
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|6547417|gb|AV393201.1|AV393201
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|6545428|gb|AV391212.1|AV391212
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|10125857|gb|BE724561.1|BE724561
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|10772132|gb|AV622955.1|AV622955
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|34987286|gb|CF561203.1|CF561203
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|16431118|gb|BI996344.1|BI996344
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|7686988|gb|AW757636.1|AW757636
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|10782372|gb|AV639052.1|AV639052
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|34987287|gb|CF561204.1|CF561204
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|15370641|gb|BI530067.1|BI530067
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|23365482|gb|BU653302.1|BU653302
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|22055775|gb|BQ812025.1|BQ812025
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|14229377|gb|BG848193.1|BG848193
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|10780185|gb|AV636865.1|AV636865
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|34993249|gb|CF567166.1|CF567166
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|49462179|gb|BP090092.1|BP090092
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|15695686|gb|BI719991.1|BI719991
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|10773890|gb|AV624713.1|AV624713
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|34984848|gb|CF558765.1|CF558765
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|10780580|gb|AV637260.1|AV637260
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC
EST: gi|10769647|gb|AV620472.1|AV620472
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGGATGGGGCCAGACAGC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAG-ATGGGGCCAGACAGC
EST: gi|49464431|gb|BP092344.1|BP092344
EST:     GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGA                         AGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGAC
genomic: GTCGATTGCCGCCAACACCTACGTCATCAGCGGCCCTTCGACCCAGAAGAgtaagtttgc ... ccgccgacagAGATCCAGGAGCTGCTGCCCGGCATCCTGAACCAGATGGGGCCAGACAGCC