1 5' 3' | 2 5' 3' | 3 5' 3' |
GGATCCACCGGCTCGCAAGCGACTTTCCAGCGGTTGCAGAGCGAGACCGGCCTGGCTGTGCAGAAGATCCAGGCCGATGTGAAGGCCAAGAAGGGCGAGgtgcgcacggatgtgtgggggagggactactggttacaaaggtgcagcagggaaggccatttcggcagggcgtaggccctggatgcaggtcgggtggagg...
species | Chlamydomonas reinhardtii |
transcript | EDO98563 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCCTGGCTGTGCAGAAGATCCAGGCCGATGTGAAGGCCAAGAAGGGCGAG GTCCTGGACATGCTCATGGGTTACGTCGGCGGCGTCAAGTTCTAAGCGGCCEST: gi|49470999|gb|BP098860.1|BP098860
genomic: GCCTGGCTGTGCAGAAGATCCAGGCCGATGTGAAGGCCAAGAAGGGCGAGgtgcgcacgg ... atttctgcagGTCCTGGACATGCTCATGGGTTACGTCGGCGGCGTCAAGTTCTAAGCGGCC
EST: GCCTGGCTGTGCAGAAGATCCAGGCCGATGTGAAGGCCAAGAAGGGCGAG GTCCTGGACATGCTCATGGGTTACGTCGGCGGCGTCAAGTTCTAEST: gi|161820768|gb|FC106203.1|FC106203
genomic: GCCTGGCTGTGCAGAAGATCCAGGCCGATGTGAAGGCCAAGAAGGGCGAGgtgcgcacgg ... atttctgcagGTCCTGGACATGCTCATGGGTTACGTCGGCGGCGTCAAGTTCTA
EST: GCCTGGCTGTGCAGAAGATCCAGGCCGATGTGAAGGCCAAGAAGGGCGAG GTCCTGGACATGCTCATGGGTTACGTCGGCGGCGTCAAGTTCTAAGCGGCCEST: gi|7616045|gb|AW721485.1|AW721485
genomic: GCCTGGCTGTGCAGAAGATCCAGGCCGATGTGAAGGCCAAGAAGGGCGAGgtgcgcacgg ... atttctgcagGTCCTGGACATGCTCATGGGTTACGTCGGCGGCGTCAAGTTCTAAGCGGCC
EST: ATGTGAAGGCCAAGAAGGGCGAG GTCCTGGACATGCTCATGGGTTACGTCGGCGGCGTCAAGTTCTAAGCGGCCEST: gi|7616044|gb|AW721484.1|AW721484
genomic: ATGTGAAGGCCAAGAAGGGCGAGgtgcgcacgg ... atttctgcagGTCCTGGACATGCTCATGGGTTACGTCGGCGGCGTCAAGTTCTAAGCGGCC
EST: GCCTGGCTGTGCAGAAGATCCAGGCCGATGTGAAGGCCAAGAAGGGCGAG GTCCTGGACATGCTCATGGGTTACGTCGGCGGCGTCAAGTTCTAAGCGGCCEST: gi|239841300|gb|GR283157.1|GR283157
genomic: GCCTGGCTGTGCAGAAGATCCAGGCCGATGTGAAGGCCAAGAAGGGCGAGgtgcgcacgg ... atttctgcagGTCCTGGACATGCTCATGGGTTACGTCGGCGGCGTCAAGTTCTAAGCGGCC
EST: GCCTGGCTGTGCAGAAGATCCAGGCCGATGTGAAGGCCAAGAAGGGCGAG GTCCTGGACATGCTCATGGGTTACGTCGGCGGCGTCAAGTTC
genomic: GCCTGGCTGTGCAGAAGATCCAGGCCGATGTGAAGGCCAAGAAGGGCGAGgtgcgcacgg ... atttctgcagGTCCTGGACATGCTCATGGGTTACGTCGGCGGCGTCAAGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATCCACCGGCTCGCAAGCGACTTTCCAGCGGTTGCAGAGCGAGACCGGCCTGGCTGTGCAGAAGATCCAGGCCGATGTGAAGGCCAAGAAGGGCGAGgtgcgcacggatgtgtgggggagggactactggttacaaaggtgcagcagggaaggccatttcggcagggcgtaggccctggatgcaggtcgggtggagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcaggt