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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGAGAAGGGCGTTGGCCGCTCTGGCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAACgtgagttgctcggcgcacggagctaccgtacgcgctggcaagcgcagtaggatatgcccatgcttgtgcgggcgcgtggatatgcctccctcgaccataacgcctacctctgctcctgccccccttcctgctgccttccacag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98214
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8828611|gb|BE212341.1|BE212341
EST:     GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAAC                         TTCATGTGCCAGGGCGGTGACTTTACCCGCGGCAACGGCACCGGTGGTGAG
genomic: GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAACgtgagttgct ... ccttccacagTTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
EST: gi|161797192|gb|FC086850.1|FC086850
EST:     GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAAC                         TTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGCGAG
genomic: GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAACgtgagttgct ... ccttccacagTTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
EST: gi|9210129|gb|BE337044.1|BE337044
EST:     GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAAC                         TTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
genomic: GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAACgtgagttgct ... ccttccacagTTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
EST: gi|8513658|gb|BE121553.1|BE121553
EST:     GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAAC                         TTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
genomic: GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAACgtgagttgct ... ccttccacagTTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
EST: gi|8287586|gb|BE025145.1|BE025145
EST:     GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAAC                         TTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
genomic: GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAACgtgagttgct ... ccttccacagTTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
EST: gi|161815720|gb|FC103174.1|FC103174
EST:     GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAAC                         TTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGCGAG
genomic: GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAACgtgagttgct ... ccttccacagTTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
EST: gi|10777244|gb|AV633924.1|AV633924
EST:     GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAAC                         TTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
genomic: GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAACgtgagttgct ... ccttccacagTTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
EST: gi|161797645|gb|FC083702.1|FC083702
EST:     GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAAC                         TTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGCGAG
genomic: GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAACgtgagttgct ... ccttccacagTTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
EST: gi|14229744|gb|BG848560.1|BG848560
EST:     GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAAC                         TTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
genomic: GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAACgtgagttgct ... ccttccacagTTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
EST: gi|49466444|gb|BP094357.1|BP094357
EST:     GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAAC                         TTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
genomic: GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAACgtgagttgct ... ccttccacagTTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
EST: gi|161797229|gb|FC086861.1|FC086861
EST:     GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAAC                         TTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGCGAG
genomic: GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAACgtgagttgct ... ccttccacagTTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
EST: gi|22059925|gb|BQ813622.1|BQ813622
EST:     GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAAC                         TTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
genomic: GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAACgtgagttgct ... ccttccacagTTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
EST: gi|10191227|gb|BE761303.1|BE761303
EST:     GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAAC                         TTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
genomic: GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAACgtgagttgct ... ccttccacagTTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
EST: gi|161800933|gb|FC084738.1|FC084738
EST:     GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAAC                         TTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGCGAG
genomic: GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAACgtgagttgct ... ccttccacagTTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
EST: gi|14229745|gb|BG848561.1|BG848561
EST:     GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAAC                         TTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
genomic: GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAACgtgagttgct ... ccttccacagTTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
EST: gi|161807616|gb|FC094621.1|FC094621
EST:     GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAAC                         TTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGCGAG
genomic: GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAACgtgagttgct ... ccttccacagTTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
EST: gi|15371993|gb|BI531419.1|BI531419
EST:     GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAAC                         TTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
genomic: GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAACgtgagttgct ... ccttccacagTTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
EST: gi|22050891|gb|BQ809391.1|BQ809391
EST:     GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAAC                         TTCATGTGCCAGGGCGGTGACTTCACC
genomic: GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAACgtgagttgct ... ccttccacagTTCATGTGCCAGGGCGGTGACTTCACC
EST: gi|9459866|gb|BE452948.1|BE452948
EST:     GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAAC                         TTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
genomic: GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAACgtgagttgct ... ccttccacagTTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
EST: gi|10791808|gb|AV629174.1|AV629174
EST:     GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAAC                         TTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
genomic: GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAACgtgagttgct ... ccttccacagTTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
EST: gi|161791742|gb|FC078338.1|FC078338
EST:     GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAAC                         TTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGCGAG
genomic: GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAACgtgagttgct ... ccttccacagTTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
EST: gi|23361835|gb|BU649655.1|BU649655
EST:     GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAAC                         TTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG
genomic: GCAAGCCCCTGCACTTCAAGGGCTCCACCTTCCACCGTGTGATCCCCAACgtgagttgct ... ccttccacagTTCATGTGCCAGGGCGGTGACTTCACCCGCGGCAACGGCACCGGTGGTGAG