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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggagttgcgcatggcgtcctcaatgcgcaccggtcagagcagggatggggttatcagtactcacaacctcgtttcttgtttgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98081
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15704435|gb|BI728740.1|BI728740
EST:     GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG                         CTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
genomic: GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggag ... ttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
EST: gi|23366005|gb|BU653825.1|BU653825
EST:     GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG                         CTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
genomic: GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggag ... ttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
EST: gi|15369548|gb|BI528974.1|BI528974
EST:     GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG                         CTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
genomic: GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggag ... ttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
EST: gi|16072701|gb|BI874697.1|BI874697
EST:     GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG                         CTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
genomic: GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggag ... ttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
EST: gi|14229761|gb|BG848577.1|BG848577
EST:     GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG                         CTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
genomic: GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggag ... ttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
EST: gi|8287287|gb|BE024846.1|BE024846
EST:     GGCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG                         CTGATGGCAGCTGGCGGTAACCTGCGCGGGCGC
genomic: GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggag ... ttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGC
EST: gi|14229760|gb|BG848576.1|BG848576
EST:     GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG                         CTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
genomic: GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggag ... ttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
EST: gi|16436996|gb|BM002216.1|BM002216
EST:     GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG                         CTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
genomic: GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggag ... ttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
EST: gi|23363043|gb|BU650863.1|BU650863
EST:     GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG                         CTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
genomic: GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggag ... ttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
EST: gi|14237609|gb|BG856425.1|BG856425
EST:     GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG                         CTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
genomic: GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggag ... ttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
EST: gi|22068393|gb|BQ818332.1|BQ818332
EST:     GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG                         CTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
genomic: GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggag ... ttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
EST: gi|23362874|gb|BU650694.1|BU650694
EST:     GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG                         CTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
genomic: GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggag ... ttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
EST: gi|22073645|gb|BQ822983.1|BQ822983
EST:     GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG                         CTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
genomic: GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggag ... ttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
EST: gi|22073669|gb|BQ823007.1|BQ823007
EST:     GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAG                         CTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT
genomic: GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggag ... ttgtttgcagCTGATGGCAGCTGGCGGTAACCTGCGCGGGCGCCAGTTCTTCAAGCAGCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCCACCACTCTGGACTCCTGGACACAGGAGCAGCTCAAGgtgcggggagttgcgcatggcgtcctcaatgcgcaccggtcagagcagggatggggttatcagtactcacaacctcgtttcttgtttgcag

- - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - AGCTCA