1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGGCGTCAACGCTGTCATCGACTGCGCAACTGCGCGGCCCGAGGAGTCTACGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAGgtagggacgaggcgaagagacacgcgtgtggtggtagggaggcgtcggtgggaggctaacccaggtaggcaccacagtcgattgcccccgttgtgaggggaggtttggctattggccaagacggtcgaaatgcgtggggtgcactactgagctgactcgagttgttgcgtcactgcacag
species | Chlamydomonas reinhardtii |
transcript | EDO98046 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAG GCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAAEST: gi|14237765|gb|BG856581.1|BG856581
genomic: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAGgtagggacga ... cactgcacagGCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
EST: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAG GCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAAEST: gi|14240632|gb|BG859448.1|BG859448
genomic: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAGgtagggacga ... cactgcacagGCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
EST: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAG GCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAAEST: gi|22074089|gb|BQ823292.1|BQ823292
genomic: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAGgtagggacga ... cactgcacagGCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
EST: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAG GCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAAEST: gi|22059343|gb|BQ813385.1|BQ813385
genomic: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAGgtagggacga ... cactgcacagGCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
EST: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAG GCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAAEST: gi|15372908|gb|BI532334.1|BI532334
genomic: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAGgtagggacga ... cactgcacagGCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
EST: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAG GCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAAEST: gi|7593489|gb|AW707740.1|AW707740
genomic: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAGgtagggacga ... cactgcacagGCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
EST: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAG GCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAAEST: gi|22065979|gb|BQ816678.1|BQ816678
genomic: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAGgtagggacga ... cactgcacagGCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
EST: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAG GCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAAEST: gi|22065986|gb|BQ816683.1|BQ816683
genomic: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAGgtagggacga ... cactgcacagGCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
EST: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAG GCCATGGGCATTCAGCGCEST: gi|14238251|gb|BG857067.1|BG857067
genomic: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAGgtagggacga ... cactgcacagGCCATGGGCATCCAGCGC
EST: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAG GCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAAEST: gi|8513586|gb|BE121481.1|BE121481
genomic: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAGgtagggacga ... cactgcacagGCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
EST: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAG GCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAAEST: gi|161817687|gb|FC099976.1|FC099976
genomic: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAGgtagggacga ... cactgcacagGCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
EST: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAG GCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAAEST: gi|7615363|gb|AW720809.1|AW720809
genomic: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAGgtagggacga ... cactgcacagGCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
EST: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAG GCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
genomic: CGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAGgtagggacga ... cactgcacagGCCATGGGCATCCAGCGCTACGTGTTCTTCTCCATCTTCGACTGCGACAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGCGTCAACGCTGTCATCGACTGCGCAACTGCGCGGCCCGAGGAGTCTACGCGCAAAGTTGATTGGGAGGGCAAGGTGGCGCTCATCCAGTCCGCGCAGgtagggacgaggcgaagagacacgcgtgtggtggtagggaggcgtcggtgggaggctaacccaggtaggcaccacagtcgattgcccccgttgtgaggggaggtttggctattggccaagacggtcgaaatgcgtggggtgcactactgagctgactcgagttgttgcgtcactgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG