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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAAGCAGCGCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATGgtgagccgggcgggttcccgagcgcgggcgagggctgtcgcaagcgtgacaagttcaggaaatgcattcgttgtcatgcgctaagtcgtcacgtgttatcgtgccgctttgtag

Basic information

species Chlamydomonas reinhardtii
transcript EDO97956
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10793767|gb|AV631133.1|AV631133
EST:     GCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATG                         GTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGC
genomic: GCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATGgtgagccggg ... cgctttgtagGTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGC
EST: gi|161806299|gb|FC092278.1|FC092278
EST:     GCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATG                         GTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGC
genomic: GCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATGgtgagccggg ... cgctttgtagGTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGC
EST: gi|10790688|gb|AV628054.1|AV628054
EST:     GCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATG                         GTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGC
genomic: GCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATGgtgagccggg ... cgctttgtagGTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGC
EST: gi|10127224|gb|BE725928.1|BE725928
EST:     GCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATG                         GTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGC
genomic: GCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATGgtgagccggg ... cgctttgtagGTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGC
EST: gi|14229626|gb|BG848426.1|BG848426
EST:     GCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATG                         GTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGC
genomic: GCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATGgtgagccggg ... cgctttgtagGTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGC
EST: gi|6546060|gb|AV391844.1|AV391844
EST:     GCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATG                         GTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGC
genomic: GCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATGgtgagccggg ... cgctttgtagGTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGC
EST: gi|161807848|gb|FC098961.1|FC098961
EST:     GCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATG                         GTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGC
genomic: GCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATGgtgagccggg ... cgctttgtagGTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGC
EST: gi|49464988|gb|BP092901.1|BP092901
EST:     GCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATG                         GTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGC
genomic: GCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATGgtgagccggg ... cgctttgtagGTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGC
EST: gi|15372595|gb|BI532021.1|BI532021
EST:     GCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATG                         GTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGC
genomic: GCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATGgtgagccggg ... cgctttgtagGTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGC
EST: gi|161822022|gb|FC105975.1|FC105975
EST:     GCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATG                         GTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGC
genomic: GCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATGgtgagccggg ... cgctttgtagGTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGC
EST: gi|7615315|gb|AW720762.1|AW720762
EST:     GCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATG                         GTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGT
genomic: GCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATGgtgagccggg ... cgctttgtagGTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGC
EST: gi|161809306|gb|FC097065.1|FC097065
EST:     GCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATG                         GTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGC
genomic: GCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATGgtgagccggg ... cgctttgtagGTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGC
EST: gi|239841870|gb|GR283727.1|GR283727
EST:     GCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATG                         GTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGC
genomic: GCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATGgtgagccggg ... cgctttgtagGTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGC
EST: gi|9210378|gb|BE337293.1|BE337293
EST:     GCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATG                         GTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGC
genomic: GCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATGgtgagccggg ... cgctttgtagGTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTAAGCAGCGCATCAGGGCCATTAAGAACATCGGGAAGATCACCAAGGCCATGAAGATGgtgagccgggcgggttcccgagcgcgggcgagggctgtcgcaagcgtgacaagttcaggaaatgcattcgttgtcatgcgctaagtcgtcacgtgttatcgtgccgctttgtag

- - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG