1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGCGCACTACTTCACGGACTCGGCGGAGGTGCGCTCGCAAGCCGGTTCCGTTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCGgtaagctcaattaacatcatgagcgagagcgttgaggaatcacggcgcagcaggggttgcggagacgaggggcgtgagtgctggtcgtggttcttaaact...
species | Chlamydomonas reinhardtii |
transcript | EDO97746 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCG TACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCEST: gi|22066441|gb|BQ816941.1|BQ816941
genomic: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCGgtaagctcaa ... tctcacacagTACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGC
EST: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCG TACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCEST: gi|10778504|gb|AV635184.1|AV635184
genomic: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCGgtaagctcaa ... tctcacacagTACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGC
EST: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCG TACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCEST: gi|23366137|gb|BU653957.1|BU653957
genomic: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCGgtaagctcaa ... tctcacacagTACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGC
EST: TTGGGCCCGCCCGGTCCGACGTCCCCACCGGTTTCACCAGCAAGACCTCG TACCTCAAGTCCCGGATGGAGCAGCTGGAGGEST: gi|10793202|gb|AV630568.1|AV630568
genomic: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCGgtaagctcaa ... tctcacacagTACCTCAAGTCCCGGATGGAGCAGCTGGAGG
EST: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCG TACCTCAAGTCCCGGATGGAGCEST: gi|15371153|gb|BI530579.1|BI530579
genomic: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCGgtaagctcaa ... tctcacacagTACCTCAAGTCCCGGATGGAGC
EST: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCG TACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCEST: gi|15372069|gb|BI531495.1|BI531495
genomic: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCGgtaagctcaa ... tctcacacagTACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGC
EST: TTGGGCCCGACCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTTG TACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGC
genomic: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCGgtaagctcaa ... tctcacacagTACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGCACTACTTCACGGACTCGGCGGAGGTGCGCTCGCAAGCCGGTTCCGTTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCGgtaagctcaattaacatcatgagcgagagcgttgaggaatcacggcgcagcaggggttgcggagacgaggggcgtgagtgctggtcgtggttcttaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttct