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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGCACTACTTCACGGACTCGGCGGAGGTGCGCTCGCAAGCCGGTTCCGTTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCGgtaagctcaattaacatcatgagcgagagcgttgaggaatcacggcgcagcaggggttgcggagacgaggggcgtgagtgctggtcgtggttcttaaact...

Basic information

species Chlamydomonas reinhardtii
transcript EDO97746
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14228332|gb|BG847148.1|BG847148
EST:     TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCG                         TACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGC
genomic: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCGgtaagctcaa ... tctcacacagTACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGC
EST: gi|22066441|gb|BQ816941.1|BQ816941
EST:     TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCG                         TACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGC
genomic: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCGgtaagctcaa ... tctcacacagTACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGC
EST: gi|10778504|gb|AV635184.1|AV635184
EST:     TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCG                         TACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGC
genomic: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCGgtaagctcaa ... tctcacacagTACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGC
EST: gi|23366137|gb|BU653957.1|BU653957
EST:     TTGGGCCCGCCCGGTCCGACGTCCCCACCGGTTTCACCAGCAAGACCTCG                         TACCTCAAGTCCCGGATGGAGCAGCTGGAGG
genomic: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCGgtaagctcaa ... tctcacacagTACCTCAAGTCCCGGATGGAGCAGCTGGAGG
EST: gi|10793202|gb|AV630568.1|AV630568
EST:     TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCG                         TACCTCAAGTCCCGGATGGAGC
genomic: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCGgtaagctcaa ... tctcacacagTACCTCAAGTCCCGGATGGAGC
EST: gi|15371153|gb|BI530579.1|BI530579
EST:     TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCG                         TACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGC
genomic: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCGgtaagctcaa ... tctcacacagTACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGC
EST: gi|15372069|gb|BI531495.1|BI531495
EST:     TTGGGCCCGACCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTTG                         TACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGC
genomic: TTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCGgtaagctcaa ... tctcacacagTACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCGCACTACTTCACGGACTCGGCGGAGGTGCGCTCGCAAGCCGGTTCCGTTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCGgtaagctcaattaacatcatgagcgagagcgttgaggaatcacggcgcagcaggggttgcggagacgaggggcgtgagtgctggtcgtggttcttaaact

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttct